Amou012562.1
Basic Information
- Insect
- Athrips mouffetella
- Gene Symbol
- -
- Assembly
- GCA_947532105.1
- Location
- OX383977.1:19625948-19635371[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.021 2.6 10.0 0.5 2 23 238 260 237 260 0.96 2 15 0.21 25 6.9 0.2 2 19 272 289 271 292 0.90 3 15 0.054 6.4 8.7 1.2 1 23 301 323 301 323 0.98 4 15 0.00071 0.085 14.6 1.8 1 23 337 360 337 360 0.98 5 15 0.92 1.1e+02 4.8 0.4 2 19 367 384 366 387 0.86 6 15 0.02 2.4 10.1 1.0 1 23 396 418 396 418 0.98 7 15 0.00012 0.014 17.1 1.1 1 23 432 455 432 455 0.98 8 15 0.083 9.8 8.1 0.5 1 19 467 485 467 487 0.89 9 15 0.03 3.6 9.5 1.8 1 23 497 519 497 519 0.98 10 15 4.5e-05 0.0053 18.4 0.5 3 23 536 557 534 557 0.96 11 15 0.00028 0.034 15.9 0.3 2 20 569 587 568 588 0.94 12 15 0.00098 0.12 14.2 1.6 1 23 597 619 597 619 0.99 13 15 0.00036 0.043 15.6 0.6 1 23 625 647 625 647 0.97 14 15 0.0011 0.13 14.1 0.4 1 23 656 679 656 679 0.96 15 15 0.00057 0.068 14.9 3.6 3 23 687 708 685 708 0.94
Sequence Information
- Coding Sequence
- ATGACGCTCCCTGCAGTATTAGATAGTGCGCTAGTATTTACAAGAGAATATTTTCAGCAAGATGATATTTGCAGATTTTGTTGGTCAAAAGATGCTAGCAAAGCGTTGTACTATAAAACTGGGGATTCCTTCGAGGAAACACCGCTATATTGTAAAGTAAAAAATTGTCTCGATATAGATTTATCCTCATACTGTGCCCAATATTATCCAAGAAAAATATGTGAGAATTGTAATAATAACATTGAAAAGTTTACAAATTTTAGGAATTTTTGCCATTATTCGAACAGAAAGCTGAATGAAATACTGAAAATAAAGGAGGAATGTGATGGTAAGGAAGAAAATGATGTAATAAAGTCAGAAGGTGAATGTGATAACGTGGATAAAATTAAAGTAAGTCATAGCTTTTCAACAGTGAAAGAAAGATCCAAGCCTCACACATTCCAGAACAATGAAGATTCTAGTGAAGATTCTGATGACAATTCCGGAGAAAGTCTACATATAAACCCGGCATCTGAGCCAACTACTTCATTTTCACACATTTATGTAGAAGTGCCCATTAAAGGTGAGAAAATTGCAGTAGAAATGGCACCTCTTGATGAGCTTGCTGATAAAAGTGCACAGAATGAAAATAAAGTTATAGAGGCACAAAATAATGCTAAGTGCAATACAGTCAGTCTAAAAGAAAATCCTGATACTACAAAAAGTTTAAATAAATGTGAGAAATGTAATAACTGGTTTCCAAACAAGAAGCTGTTATTAGCACACATGAAAGAGGATCATTCAATCTTCAAACTGAAGAATTTACCAGAAATCTCATGTTTTGGTTGCAAAAAACTGTTTACAGACAAAAGTGCAAGATGGTCTCATGAAGTCCGTACTTGCCCAGCGTTAAGAGATGGGTACAAATGTTCCAAATGTAATAAATACTTACCAAGTCGAGTAATTTATGAAAAACACATACAAAGTCATGAAAAAAATAATACAATAGACGTGCCAGAAGAACTCACATTTAAGTGCGACAAATGTAATAATCAGTTCCCAAATAAAATGCAATTATTAGTTCACTATAAGAAAGATCATACTAACACAGAAGAAATCTCATGTTTTGGATGTAAAAAAATATTTATGACTAAAAAAGGACGTTGGTCTCATGAACTTAAAAATTGTCCTGCACTGAAATATGGTTACAAATGTTCTGAATGCGATAAATATTTACCTAGCAGAGGAATATATTACAAACATATGCAAAGCCATAGAAATAAGAATCCTAGCGAAATGTCCGAGGAATTAGTATTTAAATGCGATATTTGCAATAAACAGTTTTATAATAAGATGCAAATAGCAACACATATTAATAAGGAACATTCCGTTTTAAAAACGAAAATTGTGAAAACAGAATATTCATGTTTTGGTTGCAATAAAAAATTTGCATACAAAAATGCTAGGTGGTCTCATGAAGTACGTACTTGTCCAGAACTGAAAAATGGCTACAAATGTTCCAAATGTGATAAATACTTACCAAGTAGAAAAATATATGAAACACACATGCAAAGTCATTATGAAAATAAGAAATTGGCTGAGTTTTCTGAAGAAATCGTAATTTTTTGCAATAAATGTAATGAAAAATTTCCAAATAAAATGCAATTAATAGCACATATAAAGAAAGTCCATCCTTGTGCTGCAAGAAGTGATAGAAAAGATTGTGTTTGTGAGACCTGCGGTCGTGTGTACAATAGTATGTCCAATCTTAAGGTTCACATAGACTGCGTGCATAATCGCAAAAATATATTTAAATGTTCTCAATGCGATTACCAAGCCTCTTATAAACAAGGACTTCTGTATCATATGAGGACGCACACGGGCGAACGCCCCTTCGCCTGCGAATTTTGTCCATATCGCAGCGCTACCAACTCTAACATGCGGAAACACCTTCGAGGCCACTCTAAAGAGCAAGACAAGCACCTTTTCGAGTGCTCAGCTTGCAGCAAAAAGTTTAGATTAAAACAAAGCTTACAAGAGCACATCGAGATAGTCCACGAGAAATCAGCACGGCACCTTTGTCCCCACTGCGGAAAAGTCTACCTTAGGAAGAAGAACTTAAGACAGCATTTAGCTAAGCAACACGAGGTGAAAGTTGTAGCAACGCTGCAAACACCTAAATTTGAAGCAACGTTGCAAGCACCTAAACTTGAAGCAACGCTGCAAACACCTAAATTTGAAGTAACGCTGCAAACACCTAAACTTGAAGGAAATGTGTCTATTAGTGTCGAAAACAACTTAGAATAG
- Protein Sequence
- MTLPAVLDSALVFTREYFQQDDICRFCWSKDASKALYYKTGDSFEETPLYCKVKNCLDIDLSSYCAQYYPRKICENCNNNIEKFTNFRNFCHYSNRKLNEILKIKEECDGKEENDVIKSEGECDNVDKIKVSHSFSTVKERSKPHTFQNNEDSSEDSDDNSGESLHINPASEPTTSFSHIYVEVPIKGEKIAVEMAPLDELADKSAQNENKVIEAQNNAKCNTVSLKENPDTTKSLNKCEKCNNWFPNKKLLLAHMKEDHSIFKLKNLPEISCFGCKKLFTDKSARWSHEVRTCPALRDGYKCSKCNKYLPSRVIYEKHIQSHEKNNTIDVPEELTFKCDKCNNQFPNKMQLLVHYKKDHTNTEEISCFGCKKIFMTKKGRWSHELKNCPALKYGYKCSECDKYLPSRGIYYKHMQSHRNKNPSEMSEELVFKCDICNKQFYNKMQIATHINKEHSVLKTKIVKTEYSCFGCNKKFAYKNARWSHEVRTCPELKNGYKCSKCDKYLPSRKIYETHMQSHYENKKLAEFSEEIVIFCNKCNEKFPNKMQLIAHIKKVHPCAARSDRKDCVCETCGRVYNSMSNLKVHIDCVHNRKNIFKCSQCDYQASYKQGLLYHMRTHTGERPFACEFCPYRSATNSNMRKHLRGHSKEQDKHLFECSACSKKFRLKQSLQEHIEIVHEKSARHLCPHCGKVYLRKKNLRQHLAKQHEVKVVATLQTPKFEATLQAPKLEATLQTPKFEVTLQTPKLEGNVSISVENNLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -