Amou003103.1
Basic Information
- Insect
- Athrips mouffetella
- Gene Symbol
- L
- Assembly
- GCA_947532105.1
- Location
- OX383960.1:15948531-15958253[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.62 74 5.4 5.8 1 23 3 25 3 25 0.97 2 17 8.4e-06 0.001 20.7 4.1 1 23 31 53 31 53 0.99 3 17 2.6e-05 0.0031 19.2 0.1 1 23 59 81 59 81 0.98 4 17 0.0013 0.15 13.8 0.0 2 23 96 118 95 118 0.95 5 17 6 7.1e+02 2.3 0.1 9 23 149 164 145 164 0.93 6 17 0.3 36 6.4 0.0 3 23 225 245 224 245 0.97 7 17 0.14 16 7.4 0.0 2 23 259 280 258 280 0.91 8 17 0.00083 0.098 14.4 0.3 1 23 288 311 288 311 0.94 9 17 0.032 3.8 9.4 0.1 1 23 316 339 316 339 0.92 10 17 4.9e-05 0.0058 18.3 0.1 1 23 393 418 393 418 0.97 11 17 0.0002 0.023 16.4 0.1 2 23 475 496 474 496 0.96 12 17 0.057 6.8 8.6 0.0 1 23 504 526 504 526 0.98 13 17 1.6 1.9e+02 4.1 0.5 2 23 534 555 533 556 0.93 14 17 9.5 1.1e+03 1.6 0.0 3 23 563 583 562 583 0.93 15 17 0.87 1e+02 4.9 0.3 1 23 630 652 630 652 0.94 16 17 0.0035 0.41 12.5 0.1 1 20 660 679 660 682 0.95 17 17 0.15 18 7.3 0.3 1 23 689 711 689 711 0.94
Sequence Information
- Coding Sequence
- ATGCCGTTTAGATGTGAATTCTGCTCTCGCCTGTTCAAACACAAACGCTCTCGCGATCGACACGTCAAACTGCACACCGGCGACCGCAAGTATCGCTGTGCGCATTGCGAGTCCGCCTTCTCCAGGAGCGACCATCTGAAGATCCACATGAAAACGCACGACAACCAAAAGCCATTTCAGTGCACAGTGTGCAACCGCGGCTACAACACGGCGGCTGCTCTGACGTCACACATGCAGGGGCACAAAAGGGATCGCGATCGGGACCCCGACCGCCGCCGAGCACTAAGATGCTTGCGATGCGGAGACGGCTTTAGGAGACCTGACCTGCTACAGGCGCACATGGCTTCTGCGCATGGCGTGGACGCAGCAGCAATGACACCCCCACGGCGAATACCATCCCAACCGCCCCCGACTCTCCTCGCGTGCATATACTGCACTCGCGACACCTTCACCAGTATGGAACAGCTCCAACTGCATGTGAGAGCGGCTCACTCCGCTCTGCTGAATGGTGAAACGCCTCTGCAAGTTGACCAACCGGCCCCAACAGATCTCAGTCGTCGGGGGACAGAAGAGGCTAAACGGTCCGGTTCCGCCAACGAGAACCCTTCCATCAAACGCCGTCGATCTGGTTCTGGAACACCACAAACAGCGTTATCTCCTAGCACGCTTCTATGCAATCAATGTGATGCAGCTCTACCTGACTTCGAAGCATTCCGTGCCCATTTGAAAGGGCATTTAGAAGAAGGAGGCGAATTGGGGAATTCCAGCCCAGTTCCATGTTTACACTGTGGAGCTACGTTTGCGGATGCGGCAGCTTCAGAAAGACATTTGACGGCGCATTATCTGGCTGTGTCTTGCGAATACACGTGTCACAGCTGCGCGCGCAGTTTTCCAGCCCCTGATGATTTACAGAAGCATCTGCTGGATCTTCATGCTCATCATTTATATCGATGTTCGCTCTGCAAGGAAATCTTTGACTCAAAAGTTGCTATCCAGGTGCACTTCGCGGTAGCACACAGCGGTGAGAACAAAGTGTGGATGTGTCGTGGTTGCGGCGCGGGCGCGGGCGCGATGCGCTCGGAGGCGGAGGGCGCGGCGCACGTGCTGGCGCGACACGCGGCGCGCTGCGGCTGCGGGGCCGTCGTCTCCGGGCCAAGGGCGAGGTCACATCGCGCTTACAGGTGCCCCGTACCCACATGCACCGAAACCTTTGCCGTCCAATATCTACTGGAGCGACATATGCAAGTGAATCATGCTATGCCACAACCAATCTTAAACGGGGACATGCCCAGACCGAAACGAACTGAGAACAATAATTCTTCAGAGGGAGTCGACGGGGCGTGTTCGCCTTGCAACAGCGGGGCTGATAACGGACCAAGTGCTCCCGAAGAGAGGCGGCGAAAAAATGGCGCCGTTGCTTTACAGTGCGCCTACTGTGGGGAGCGCACGAGGAGTCGCGCGGAGCTAGAGGCGCATACTAGAGCACATTCTGGCACTGCCGCCGCTAGGCACAAGTGTCTCATCTGTGATGAAGTCCTTCCGTCTGCTGCCGTCCTTGCCGAGCACAAACTTACACATTGTAAGGTGGTCACCGGCGACACTTGTGCGAGATGTCGAGCACGACTGCCGACCGAAGAAGCGTTCCTAACCCACATGGCGCGCCACCACCCCGCGCTGCCCGCGCCCTGTGTCATCTGCCGGCAAACGCTAGCTTCCGAGGCGGAGGCCCGGTTGCACGCGCGGTTTCATTTGAGGGTGACAGAAGACGAGCAGAGATGTGCGATCTGTTTGCGCGCATTGCCCGAAGCGGAAGCGGGGGAGGGGGCGAGAGCTTGTTCCTCTTGCTACGCGAGGCACGCCGCCCCGAGGGCCGCGCCGCCGGCCGACCACGACTGTCGGCTGTGTCGCCGGGCCCTTGGCTCTCCAACTCGGTTACAGGCGCACCTGATCGAGCACACGTTCGCGGGAATTGGCGCATTCACGTGCTACCTGTGCTCAGCAGTGTTCACGAGCGCGGCCGGCCTGCAGCGCCACCTGCCCGAGCACAGCGCCGCGCCGCGCCCCTACGACTGCGCCAGGTGCGGACTCAAATTCTTCTTCCGCGCTGAACTCGACAACCACGCTTTCGTGCATCTCGAGGAAGCTGAGATCGCTCAAAGAGCGTTCTACGAAGCGTACGCCCGAGGCGCTGCGTCAGCTTGGGCCGCTTTAGCTCCCCCAGAACCGGTCACGACCCCGACTATAGAAGTGCCGGTGAAGCAAGAAGTCGAGATCAAGGAGGAGAAGATGGATGAGTATATAGAAGTGGCATCCCCTCCCCCTCCCGCTCCACCTCCCGAGGAAGCTAATAACAATACTCCACCGCCGGTCGTTAAACAAGAGAAACCAGACGAAGACTGA
- Protein Sequence
- MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRDRDPDRRRALRCLRCGDGFRRPDLLQAHMASAHGVDAAAMTPPRRIPSQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGETPLQVDQPAPTDLSRRGTEEAKRSGSANENPSIKRRRSGSGTPQTALSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELGNSSPVPCLHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFPAPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGENKVWMCRGCGAGAGAMRSEAEGAAHVLARHAARCGCGAVVSGPRARSHRAYRCPVPTCTETFAVQYLLERHMQVNHAMPQPILNGDMPRPKRTENNNSSEGVDGACSPCNSGADNGPSAPEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGTAAARHKCLICDEVLPSAAVLAEHKLTHCKVVTGDTCARCRARLPTEEAFLTHMARHHPALPAPCVICRQTLASEAEARLHARFHLRVTEDEQRCAICLRALPEAEAGEGARACSSCYARHAAPRAAPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHSAAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPVTTPTIEVPVKQEVEIKEEKMDEYIEVASPPPPAPPPEEANNNTPPPVVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_00077747;
- 80% Identity
- -