Amou028061.1
Basic Information
- Insect
- Athrips mouffetella
- Gene Symbol
- PACC
- Assembly
- GCA_947532105.1
- Location
- OX383974.1:12637000-12641240[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.4 1.1e+03 1.7 0.2 3 17 49 63 48 64 0.85 2 13 0.049 5.8 8.9 0.2 5 23 382 400 381 400 0.96 3 13 0.015 1.7 10.5 0.2 3 23 408 428 406 428 0.94 4 13 4.1 4.8e+02 2.8 0.3 2 23 436 457 435 457 0.86 5 13 4.1e-07 4.9e-05 24.8 0.4 2 23 463 484 463 484 0.97 6 13 0.0019 0.23 13.3 3.7 1 23 490 512 490 512 0.98 7 13 0.00024 0.029 16.1 2.1 1 21 516 536 516 537 0.94 8 13 0.00048 0.057 15.2 0.1 1 23 570 593 570 593 0.95 9 13 0.00041 0.049 15.4 0.6 3 23 603 623 602 623 0.98 10 13 2.3e-05 0.0028 19.3 0.4 1 23 634 656 634 656 0.98 11 13 0.00011 0.013 17.2 3.4 1 23 662 684 662 684 0.98 12 13 0.0033 0.39 12.6 0.3 3 23 692 712 690 712 0.98 13 13 3.5e-05 0.0041 18.8 1.1 1 23 718 741 718 741 0.97
Sequence Information
- Coding Sequence
- ATGGAATCGTGGGAAAACTTGTGTCGTTGCTGCTTGTCACCAGATTCGGACGTATCGATTATTGAAGACAACACCGTAAGGGAAAAGTTCGTGGAAATCACTTCAGTCGAGGTGAGCCAAAGTGATGGTCTACCACAGAAGCTGTGCAAAGATTGTCACAGAATCATGACATCTGCATATCAGTTCCGACAGCAGTGCATCAAAATGGATGCTGAACTAAAATTTCAGTTGGAAGCCATAATGCAACAAAATAAGGAAAACGAAAGTGAAAATGAACCAACTGTCAATAACTACACAGAAAATCAAGAGGAAGCGGCTACAGATAGTGAGAGTATAGTTGATGATATAGCTAACAACCCAATGAAACAATTAGAAGCCATCATTAAGCAAGAGCCAACAGACAGTGACGATGATTACTACTATGTTCTTGTTATTGATGATCCCAAAGACAAAGAAAATGCTCAAGAAATTCAGGAAAAAAAACAAGAAGTAAAAGTAGAACAAAAGCATGAAGAACTAGAACAAGTACACAATATAAAACAAGAGCTTAAAGATTGCATTCAAGGAGAAAATGTCTCAAATCAAAAGGTAGATAACCAGCCAGGAGAGACATTTGAAAATGCTTATGATTCATTTCTTATATCAAATACAAAGGTCCCAGTTAATGTGCCAGCTACAATCCTAGAAAATGAAGAGGATAGCCAGGAAACTGATGATCATTTTGATCATGGTATGGACATTGATGAATCACAAGATAGTACATCCCAAGATCAAAATTATACAGAAATTACTGATCAACAGGACACTCAGGAAGTGATAACTGGAGACTTAGAAGAAATAAATACTTTACAAGTATCCGATAAAAATAGCAGCATTATAAAAATTCTTACTACAACAGGTGCTGATGGAACTTTAGTACTCAATGGTAGCGACGGGATTCAGTACCTTACTACTGGTGATCAGCTAATTGACACTGGAGAGGATGGTGATCAACTCAACCAAGAAGAGGTCATCTTCTGTGAAGGGGATGAATCTTCCCAATTCCAGATACTGAAATGTGATGGTTCAGATTTGATTATAGAATATGCTGATGGGGACCAGATAGCTACAGTTTTACAACAAGAGGATGGGACATTCCTGTGTGACTGTGGGGAGCAATTTGAAGATTTAACAGAATATGAAAAGCATCAGTATAAACACAACCCAGCTGGTGACCATTTATGCAATTTGTGTGGTAAAGGATTTGAATCAGCCGAGATTCTGACGGGACACATGCTTCTACACAGTGGTTCAGGCCTGCTTATTTCTTGCCCTTTCTGCGACCAACTCATCAAAAGAAATGCACTCACACAGCATATCAAATATAGTCACAATAACATAAAACCTGAATGCAACATTTGTTGGAAAACATTTGCTAATCCAAACAATCTGAAAAGACACCAAATGATTCACACAGGTGTCAGAGAATTTGAATGTGATGTCTGCTCCAAACGTTTCCATCAGAAGATAACAATGCAAACTCACAGGCTGACACATATGAATCCGTTTTCTTGCAGTCATTGTGATCAGACTTTTGAGAATAAAACCAGTTTGCAACTACATAAGAATTCTGATGAGTGCTCTAAGTCAAAAATTAAGAAAGTGAAGGATGAATTGATGAAGACTGTCAGACAGGAGATAACAACTAATCACGGGAAGCTGCTAGGTTACGCCTGTTCATTATGCAAGAAGATGTTCTCTTTAGAATCTGCATTAGAACAGCATGTTGAAGTGACTCATCTGACTGTGGACCCATCAGACTTGCTGTGTTCAGAATGTGGTGAAGTTTTCCCTTCTAAGAAAGACATGCACTCCCATGTTTTGACTCATAAAAACTTTAAACAGCGACATATGAAAAGATTTGAATGCAAGATATGTGGAAAAGGATGTTCAAGTCAAGCTATGCTAGTAATGCATGAAAGAGTTCATACAAACGAACGGCCATTCCCTTGTGCGCTTTGCTCATTGCGATTTAAGACTAAGACACATCTACGCACCCATCAACTTACTCACACACGTGAAAAGAAGTTTGGTTGCTCTGTGTGTATGAAATTCTTTGCTCTGAAAGGTAATTTGGTTGTACATCTGAGGACTCACACTGGGGAACGTCCATATGTGTGCACAATATGTGAAGAAGCTTTCATAGACTCCAAATACCTGAAAAAGCACAAGCAAAAGAAACATGCTATTGACAATGTCCCTTGGAACCAATATTAG
- Protein Sequence
- MESWENLCRCCLSPDSDVSIIEDNTVREKFVEITSVEVSQSDGLPQKLCKDCHRIMTSAYQFRQQCIKMDAELKFQLEAIMQQNKENESENEPTVNNYTENQEEAATDSESIVDDIANNPMKQLEAIIKQEPTDSDDDYYYVLVIDDPKDKENAQEIQEKKQEVKVEQKHEELEQVHNIKQELKDCIQGENVSNQKVDNQPGETFENAYDSFLISNTKVPVNVPATILENEEDSQETDDHFDHGMDIDESQDSTSQDQNYTEITDQQDTQEVITGDLEEINTLQVSDKNSSIIKILTTTGADGTLVLNGSDGIQYLTTGDQLIDTGEDGDQLNQEEVIFCEGDESSQFQILKCDGSDLIIEYADGDQIATVLQQEDGTFLCDCGEQFEDLTEYEKHQYKHNPAGDHLCNLCGKGFESAEILTGHMLLHSGSGLLISCPFCDQLIKRNALTQHIKYSHNNIKPECNICWKTFANPNNLKRHQMIHTGVREFECDVCSKRFHQKITMQTHRLTHMNPFSCSHCDQTFENKTSLQLHKNSDECSKSKIKKVKDELMKTVRQEITTNHGKLLGYACSLCKKMFSLESALEQHVEVTHLTVDPSDLLCSECGEVFPSKKDMHSHVLTHKNFKQRHMKRFECKICGKGCSSQAMLVMHERVHTNERPFPCALCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCTICEEAFIDSKYLKKHKQKKHAIDNVPWNQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -