Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 0.00036 0.13 13.2 0.1 2 37 53 88 52 96 0.83

2 2 0.00057 0.21 12.6 0.0 2 37 150 185 149 193 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	0.00036	0.13	13.2	0.1	2	37	53	88	52	96	0.83
2	2	0.00057	0.21	12.6	0.0	2	37	150	185	149	193	0.83

Coding Sequence: ATGCTTGCTAGGTGGCAGCACAAACGCAACGTTGGAATGCGTATAGAGGTCGCTAAATTTCACAACATCGGGCAGGACCACAGTAGCCTAGTTGTATTCGGCAAGCCCAAACTATACAAACGCAAAAAAGGCGCAAGGACAAGAATACCACCGGATCCTAACATACTTAAAACTGCTGTGGAACGTGTTATTCATAAAGGTAGTTCCTTGCGAAGTACAGCTAAAGCATATAATATGTCACATGTAACGCTAAGACGATACGTTACTAAAGCAAGAAACAGTAAGGAAGAAATAAAATATGCCCCTGATTACGCCAAAGCTAAAAAAGTATTTTCTACTGATGAAGAAAAGCAATTAGTACAGCATATTAAAACAGAACTGCAAGTATTCTGCAAGCCTAAACTATACAGACGTAAAAAAGGCGCACGGATAAGAATACCACCAGATCCTAACATACTCAAAACTGCTGTGGAATGTGTTATTCATAAAGGAAGTTCCTTGCGAAGTACAGCTAAAGCATATAATATGTCACATGTAACATTAAGACGATACGTTACTAAAGCAAGAAACAGTAAGGAAGAAATAAAATATGCCCCTGATTACGCCAAAGCTAAAGTATTTTCTACTGATGAAGAAAAGCTATTAGTACAGCATATTAAAACAGAACTGCAAGGTCAATTTTCTTTGAAAAGAGTTCGTCAGTTAGCATTTTATTTTGCTGTCAGAAATAAAAAAAAGTTCCCACCTAACTGGAAAAAAAATAAAGAGGCGACCCAAGACTGGTTTTATGGATTCTTGCATCGAAATCCAAATTTGAAGCCTAGCTAA
Protein Sequence: MLARWQHKRNVGMRIEVAKFHNIGQDHSSLVVFGKPKLYKRKKGARTRIPPDPNILKTAVERVIHKGSSLRSTAKAYNMSHVTLRRYVTKARNSKEEIKYAPDYAKAKKVFSTDEEKQLVQHIKTELQVFCKPKLYRRKKGARIRIPPDPNILKTAVECVIHKGSSLRSTAKAYNMSHVTLRRYVTKARNSKEEIKYAPDYAKAKVFSTDEEKLLVQHIKTELQGQFSLKRVRQLAFYFAVRNKKKFPPNWKKNKEATQDWFYGFLHRNPNLKPS

Sequence clustering based on sequence similarity using MMseqs2