Alep033061.1
Basic Information
- Insect
- Athetis lepigone
- Gene Symbol
- RTase_1
- Assembly
- GCA_033675125.1
- Location
- CM066242.1:7462626-7475534[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0076 0.79 11.4 1.8 1 23 612 634 612 634 0.99 2 10 1.8 1.8e+02 4.0 0.1 1 23 638 661 638 661 0.95 3 10 0.00011 0.011 17.2 1.2 1 23 694 716 694 716 0.98 4 10 0.0092 0.96 11.2 1.2 3 22 728 747 727 751 0.89 5 10 0.00019 0.02 16.4 0.4 1 23 792 814 792 814 0.98 6 10 0.028 2.9 9.6 0.5 2 22 823 843 822 847 0.90 7 10 4.8e-05 0.005 18.3 0.4 1 23 855 878 855 878 0.91 8 10 0.0005 0.052 15.2 3.4 1 23 884 907 884 907 0.96 9 10 0.0051 0.53 12.0 3.3 3 23 916 937 914 937 0.91 10 10 0.053 5.5 8.8 2.5 1 23 943 966 943 966 0.96
Sequence Information
- Coding Sequence
- ATGGACAGTATTGCCATGTTTGTGACTGACACGCGCATTGCATTTAGCACCAACGACTTTGTGATTGCTGTCTTTTTAGACATTTCGTCAGCATATGACAATGTACTTCTCGCCGCACTCAGAAGTAAACTACGTCAGCTGAGTGTTCCGACGAAGATGGTTCATTGCATTTGTAATTTACTGACTGGACGCACGGTTAGTCTCCACATACCTGGTGAGAAATTTGTTCCTCGGACAATTTGGCGCGGTCTTCCTCAAGGGTCCGTTCTAAGTCCCCTGTTATATGCTATCTACACCTCTGATTTACACAGTTGCCTCAATCTCGATTGCCAAATACTGGAATATGCAGATGATTTGTGCTTGTATATACCTCATAGCTCTGTCCAAGAAGCTGTACCATCAATGCAAGTTTCTCTAGATTCCTTAAACAGTTGGCTTACTGATCATGGTCTTACCCTGTCCGCTTCTAAAAGCTCCGCTGTAGTTTTCACGCGCAAAAGAACAGTACCTGATGTTCACCTAGAAATTGAAGGATCTCGCATCAAGGTTAAAGATAAAGTGAAATTTCTGGGTGTCATCTTGGACTCGAAACTATCAGGTGCTTTCCACCTCAACTACATTGTGAGTAAGTGTGAGAGAAACATTAATATGATGCGGGCCCTTGCTGGGGTATGGTGGGGAGCTCATCCATTTTCTCTCAAACTTATTTACAATGCCACAATTAGGAGCTTGCTGGATTATAGTACATTTTTGCTAGAGCCGTGTAGTAAAGTCGCGTTAAGGAAACTTGAAACCATACAGTCCAAATCTCTGCGTAttatacttggctgcatgagatCCACCCCAATTAATGCATTACAGGTCGAGAGTGGAGATCCTCCTCTTCTTCTTCGCAGACAGTATTTGGCAGACAGATTCCTTTACAAGGCATTTTTGCTACAGAACCATCAATTATTGTCCAAGCTACACTGCCTAAATGGCCTATGGAGTCATAGTGGATATTGGAGACTTAAAGAAcccccattaattttaaattctcttAAAAAGATTAACATACTGAAAGACACTACCCCGGTACAACAGTGCACTAAACTTCCAGTATTTGATCATTCTTATaatgtaataaacttttatccAAATTATATCCCccatataaatttaaatcacTCTTCACATCATGCCAATGTACAATTCTCTGCTATTGTGGACGAAAAATGGCCTGACTACTTCAGATTCTTTACTGATGCGTCAAAACTTTCTCCACAAGGTAAAACTGGCATTGCTGTATACAGCCCTAGCTCACAAATCTTTCTCCAGTTCCAATGTCCTCCAGAGGCATCAGTGTTTACTGGAGAATGCATCGGCATCCTTGAGGCAAGCTTGTATATAGAATCTCATAGCAACATTAAAAAGGCAGTTATTTTTTCAGACTCTAAAAGCGCTTTGGAATCCATTATGAAAAACccatttaaagataaattacgcaGTACTTTAACTTTGCAAATTAGAGAATGTTTGTACAATTGCCACATGAACAATGTTGAGGTAGTACTGGTTTGGATCCCGGCCCATGTTGGTATTACAGGTAATGAGTGTGCAGACGCCTCAGCTAAGGCTGCTGTTGACAGCAGCACTGCCGACCTTAAACATTACTCTGTCCAAGTTTACGACCTTATTCATTCTTGTAAAAGGGATTTATTTAACTCCTGGCAGGCAGCATGGTCCCAATCCAGTAAAACCAAGGGAGGTCTGTATGCCTCTATTCAGCCTGAAGTCCCAGTTAAACCATGGTATTATAAGTATAAGAAGGTTCCAAAAACGAACTCAAAAAACTACAAATGCGAGGTATGCGAGTGTGCTTTCGCGTCAGAAGTGTCTTACAACTACCATACGAACAAACACAGGCGGCGCTACCAGTGCATGGCTTGTGGAGAGCGGTCCGGCAGTAAACGAGCGGCCATCAAACATTATGAAATGGTGCATTATCACGGACCATCAATAGAGATTGACGTCCAAAGTCACCAAAATGGCGCCTCGGATGGCGCAGAAGATGTAAGTTCAAAGCAGTCCTCAGCAACATTTTCGTGTGAGTTCTGCGACAAAAGCTTCAGATGGAAGGCCTCTTTACGTAAGCACGTCGAGACGCACAGAATAGAGACCGGACAGAAACGGAAGCCTTATTGTGAACCGTGCAGgtTATCGTTCACAAATACATCGAATCTTCAGAAACATGTGAAAACTAGTTCTAAACatcaaatacaattaaaacttaGGAAACTAACAGAATCCCTGCCCGAAGACTCCTCAAGCCCGGAAAAGCATCAACAACGAATAGATCAGATCAAGTGCTCAGTGAACAGCGCCAAAGAGAAATTCCCGTGCCCTCAGTGCGACAAGAAGTTCCAGTGGAGAGGCAACCTGTTGAGGCATCTGAACAGTCATGTCGCTAGAGCCAACGGTGAATTAGTCTGTGAGCCGTGCAACAGAACATTTTCCTCAATAGCGACGTACAAGCAACATATGAAGATCAGTAGGAAACACGTCAGCGAGAATGATTTCAAATATATGTGCAGCGACTGTGGCAAACGATTCGCGAACAAGACGCGTCTCAAAGATCACGTCGACTGGGAGCATCTCAAAAACTACGTGCATACTTGTCCTGTCTGTCAAAagGTGTTCAAGAGCCACACATCGCTGTATCTTCACAAGCAAGTGGTCCATAAAAAGGATCATGCAGAACATCTCTGTGATCATTGTGGAAAACCTTTCCCgAACCAGGCCAAACTCCGTTGTCACATGCTAGCGCTGCACAGCGCGCAGTCGGCGTACAAGTGCGGCACGTGCGGCGCGCGCTTCAGCTGGCTCTCGTGTCTGTCGCGACACAACAAGAAACTGCACCCCAACACGCAGCCGACCTAG
- Protein Sequence
- MDSIAMFVTDTRIAFSTNDFVIAVFLDISSAYDNVLLAALRSKLRQLSVPTKMVHCICNLLTGRTVSLHIPGEKFVPRTIWRGLPQGSVLSPLLYAIYTSDLHSCLNLDCQILEYADDLCLYIPHSSVQEAVPSMQVSLDSLNSWLTDHGLTLSASKSSAVVFTRKRTVPDVHLEIEGSRIKVKDKVKFLGVILDSKLSGAFHLNYIVSKCERNINMMRALAGVWWGAHPFSLKLIYNATIRSLLDYSTFLLEPCSKVALRKLETIQSKSLRIILGCMRSTPINALQVESGDPPLLLRRQYLADRFLYKAFLLQNHQLLSKLHCLNGLWSHSGYWRLKEPPLILNSLKKINILKDTTPVQQCTKLPVFDHSYNVINFYPNYIPHINLNHSSHHANVQFSAIVDEKWPDYFRFFTDASKLSPQGKTGIAVYSPSSQIFLQFQCPPEASVFTGECIGILEASLYIESHSNIKKAVIFSDSKSALESIMKNPFKDKLRSTLTLQIRECLYNCHMNNVEVVLVWIPAHVGITGNECADASAKAAVDSSTADLKHYSVQVYDLIHSCKRDLFNSWQAAWSQSSKTKGGLYASIQPEVPVKPWYYKYKKVPKTNSKNYKCEVCECAFASEVSYNYHTNKHRRRYQCMACGERSGSKRAAIKHYEMVHYHGPSIEIDVQSHQNGASDGAEDVSSKQSSATFSCEFCDKSFRWKASLRKHVETHRIETGQKRKPYCEPCRLSFTNTSNLQKHVKTSSKHQIQLKLRKLTESLPEDSSSPEKHQQRIDQIKCSVNSAKEKFPCPQCDKKFQWRGNLLRHLNSHVARANGELVCEPCNRTFSSIATYKQHMKISRKHVSENDFKYMCSDCGKRFANKTRLKDHVDWEHLKNYVHTCPVCQKVFKSHTSLYLHKQVVHKKDHAEHLCDHCGKPFPNQAKLRCHMLALHSAQSAYKCGTCGARFSWLSCLSRHNKKLHPNTQPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -