Alep007554.1
Basic Information
- Insect
- Athetis lepigone
- Gene Symbol
- -
- Assembly
- GCA_033675125.1
- Location
- CM066220.1:2510468-2514815[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.042 4.4 9.1 1.3 1 21 93 113 93 116 0.87 2 18 0.074 7.7 8.3 0.6 2 23 145 167 144 167 0.96 3 18 0.0049 0.51 12.0 0.0 1 23 215 237 215 237 0.96 4 18 0.0015 0.16 13.6 2.3 1 23 242 265 242 265 0.96 5 18 8.2 8.6e+02 1.9 0.2 2 10 273 281 272 287 0.89 6 18 0.014 1.5 10.6 0.4 2 23 303 325 302 325 0.97 7 18 0.0002 0.021 16.4 0.8 1 23 331 353 331 353 0.97 8 18 2.6e-05 0.0027 19.2 1.2 1 23 359 381 359 381 0.98 9 18 0.00016 0.017 16.7 0.9 1 22 387 408 387 408 0.96 10 18 3.1 3.2e+02 3.2 1.6 1 21 476 496 476 499 0.86 11 18 0.074 7.7 8.3 0.6 2 23 528 550 527 550 0.96 12 18 0.0049 0.51 12.0 0.0 1 23 598 620 598 620 0.96 13 18 0.0015 0.16 13.6 2.3 1 23 625 648 625 648 0.96 14 18 1.6 1.7e+02 4.1 0.7 2 16 656 670 655 678 0.75 15 18 0.014 1.5 10.6 0.4 2 23 686 708 685 708 0.97 16 18 0.0002 0.021 16.4 0.8 1 23 714 736 714 736 0.97 17 18 7.3e-06 0.00076 20.9 1.3 1 23 742 764 742 764 0.98 18 18 6.3e-05 0.0066 18.0 2.8 1 23 770 793 770 793 0.98
Sequence Information
- Coding Sequence
- ATGAGAACTCACGATGATTTAGAGTTTGCTAAATGGGTATTAACGGTAGGCGATGGATCAGCTAATGAAGATGGTACCCGACGTACAACTATCAGGGGTCTTAAAATTAAGCAAGAAGTTAAACCGGAACCGAAAAAAGAACAGAAAGGTGAAAAGAAACGTATCACTAAGGAGGAGAAGGAAAATAAGGAGGCATTGAAAAAATTACACACAAATATTGAAGAAATTCTGACATGTTCCAATGCCACTGCCATTTCGGGTTTCGATTATCGCGGCTACTTATGTTGCTACTGCGACTCGCAGTATCCCGACCCCGCAAACTTGAAGAAACATAACCTTGACAATCACAAAGGATCACCCGACTCTATACttccaaaatataataaaaacagaataGATGAGTATTATGTGAGATTGGACATAACTGATTTACAATGCAAACTCTGTAACACTGctatagacacaatagaacaTTTGTTAGAACATCTAAAGAGTAACCACAAAAGGGTAACACATACTGATATTAAAAACCAAATCTTTCCATTCAAATTTAACAGTGAGGCGATGACTTGCTGCATATGCTCAAGTATTTTCTCAAAGTTTATAATTCTATCTCAACATATGCACACTCACTATAGAAATTTCATTTGTGACGAATGTGAAATTGGTTTTGTCATCAAAGGAGGACTGAGACGACACCTCTCTCTGCACGATAAAGGCGTTTTCAAATGTACCAAATGTAGTAAAACTTTTGATTCCCAAAAAAAAGCGAACAGCCATGAAAGATTAGTCCATGTAGTAAAAGGTAGAAAGAGCAAATGCGGATACTGTAACGAGAAATTTCTGAATCACCTGATGAGAGATAATCATTTGGTCGATGTTCATGGAGTGAAATTGAAGATAGTAAAATGCCATGCATGCGAGAAGATACTACCGAACACAAATGCATTAAGGATACATATAAGGAGAGATCATTTGATGGAGAGACGTTTCAAATGCACGGAATGCGATAAAGCCTTTTTCCAAGCCGCTGATTTGAAATTCCACATGGTAAAGCACACAGGTGCTAGAGAGTTCAAATGCACAGTGTGCAACAAGCTGTATAGCCGTAGGACAACTCTAATACAGCATATGGAAATACATAGCGATGTGAGACGGTTTAAATGCGAACATTGCAAACGTGGGTTTGTTCAGAAAGCTAGCTGGAAAGGGCATATGAGGAGTACCCGACGTACAACTATCAAGGGTCTTAAAATTAAGCAAGAAGTTAAACCGGAACCGAAAAAAGAACAGAAAGGTGAAAAGAAACATATCACTGAGGAGGAGAAGGAAAATAAGGAGGCATTGAAAAAATTACACACAAATATTGAAGAAATTCTGACATGTTCCAATGCCACTGCTATTTTGGGAGTCGATTATCGCGGCTACTTATGTTGCTACTGCGACTCGCAGTATCTCGACCCCGCAAACTTGAAGAAACATAACCTTGACAATCACAAAGGATCAACCGACTCTATACTtccaaaatttaataaaaacagaatAGATGAGTATTATGTGAGACTGGACATAACTGATTTACAATGCAAACTCTGTAACACTGctatagacacaatagaacaTTTGTTAGAACATCTAAAGAGTAACCACAAAAGGGTAACACATACTGATATTAAAAACCAAATCTTTCCGTTCAAATTTAACAGTGAGGCGATGACTTGCTGCATATGCTCAAGTATTTTCTCAAAGTTTATAATTCTATCTCAACATATGCACACTCACTATAGAAATTTCATATGTGACGAATGTGAAATTGGTTTTGTCATCAAAGGAGGACTGAGACGACACCTCTCTCTGCACGATAAAGGCGTTTTCAAATGTACCAAATGTAGTAAAACTTTTGATTCCCAAAAAAAAGCAAACAGCCATGAAAGATTAGTCCATGTAGTAAAAGGTAGAAAGAGCAAATGCGGATACTGTAACGAGAAATTTCAGAATCACATGATGAGAGATAATCATTTGGTCGATGTTCATGGAGTGAAATTGAAGATAGTAAAATGCCATGCATGCGAGAAGATACTACCGAACACAAATGCATTAAGGATACATATAAGGAGAGATCATTTGATGGAGAGACGTTTCAAATGCACGGAATGCGATAAAGCCTTTTTCCAAGCCGCTGATTTGAAATTCCACATGGTAAAGCACACAGGTGCTAGAGAGTTCCAATGCACAGTGTGCAACAAGCTGTATAGTCGTAAGGAAACTCTAAGACAACATATGGAAATACATAGCGATGTGAGACGATTTAAATGCGAACATTGCAAACGTGGGTTTGTTCAGAAAGCTAGCTGGAAAGGGCATATGAGGAGTAAGCACGGGGAATTGGTCTAA
- Protein Sequence
- MRTHDDLEFAKWVLTVGDGSANEDGTRRTTIRGLKIKQEVKPEPKKEQKGEKKRITKEEKENKEALKKLHTNIEEILTCSNATAISGFDYRGYLCCYCDSQYPDPANLKKHNLDNHKGSPDSILPKYNKNRIDEYYVRLDITDLQCKLCNTAIDTIEHLLEHLKSNHKRVTHTDIKNQIFPFKFNSEAMTCCICSSIFSKFIILSQHMHTHYRNFICDECEIGFVIKGGLRRHLSLHDKGVFKCTKCSKTFDSQKKANSHERLVHVVKGRKSKCGYCNEKFLNHLMRDNHLVDVHGVKLKIVKCHACEKILPNTNALRIHIRRDHLMERRFKCTECDKAFFQAADLKFHMVKHTGAREFKCTVCNKLYSRRTTLIQHMEIHSDVRRFKCEHCKRGFVQKASWKGHMRSTRRTTIKGLKIKQEVKPEPKKEQKGEKKHITEEEKENKEALKKLHTNIEEILTCSNATAILGVDYRGYLCCYCDSQYLDPANLKKHNLDNHKGSTDSILPKFNKNRIDEYYVRLDITDLQCKLCNTAIDTIEHLLEHLKSNHKRVTHTDIKNQIFPFKFNSEAMTCCICSSIFSKFIILSQHMHTHYRNFICDECEIGFVIKGGLRRHLSLHDKGVFKCTKCSKTFDSQKKANSHERLVHVVKGRKSKCGYCNEKFQNHMMRDNHLVDVHGVKLKIVKCHACEKILPNTNALRIHIRRDHLMERRFKCTECDKAFFQAADLKFHMVKHTGAREFQCTVCNKLYSRKETLRQHMEIHSDVRRFKCEHCKRGFVQKASWKGHMRSKHGELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -