Alep027855.1
Basic Information
- Insect
- Athetis lepigone
- Gene Symbol
- -
- Assembly
- GCA_033675125.1
- Location
- CM066238.1:2314905-2315702[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.6e-13 1.3e-09 38.8 0.0 2 39 16 53 15 58 0.96
Sequence Information
- Coding Sequence
- ATGGTACGAAATTATAGACGTAAAACAGATCGTGGAACGTGGGAAGAAGACGATATGAGAAGAGCGGTTAGAGCTGTTCTTTCTGATACTATGGGATTTCTTCGAGCGTCGGCTACATATAATGTGCCTAAATCGACCTTGGAACGACGAGTGAGAACGGCTCGATGTACTGAAAATGCTGACACTGATTCAGATAATGATTATGGCAAAAGGAAATTAGGACGctataaaacagtttttaataaagaacAGGAAGAAGAATTGTCTCAGTACATTAAATCAATGCAAGCGCGCCTTTTCGGTTTAACTGGCAAAGAGCTTCGGATTTTAGCTTTCCAGTTAGCTGATAAAAACCATATTGAGAACCCATTCAACGCAGAAACTGGAATGGCTGGAGAAGACTGGCTCAGTGGATTCCTAAAAAGGCATCCTGAAATTTCCTTTAGACGACCAGAGCCAACTTCTGCTGCGAGGGCTATGGCTTTTAACAAAGTGGCAGTAAATCAGTTTTTCGCATTGTTGGAAAGTGTTGTAGAAGAGCATGGCCTTACGCCTGAAAGAATTTATAACGTCGATGAAACCGGCGTCAGTACTGTGCCAAAAACTCAGTCAAAGATATTGTCAGTCAAGGGTCTGAAGCAAGTCGGCTGCTTGTCATCTGCAGAAAGAGGGCAATTAGTTACGGCTGAAATCTGTTTTAACGCCGCTGGAACTTATATACCACCTATGCTAATCTACGCCCGAAAACGAATGAAGAGTGAATTGCTAGATGATGCATCACCGGGATTTTGGGGGTAG
- Protein Sequence
- MVRNYRRKTDRGTWEEDDMRRAVRAVLSDTMGFLRASATYNVPKSTLERRVRTARCTENADTDSDNDYGKRKLGRYKTVFNKEQEEELSQYIKSMQARLFGLTGKELRILAFQLADKNHIENPFNAETGMAGEDWLSGFLKRHPEISFRRPEPTSAARAMAFNKVAVNQFFALLESVVEEHGLTPERIYNVDETGVSTVPKTQSKILSVKGLKQVGCLSSAERGQLVTAEICFNAAGTYIPPMLIYARKRMKSELLDDASPGFWG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00077415;
- 90% Identity
- iTF_01526956;
- 80% Identity
- -