Aibi022913.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Atherix ibis
Gene Symbol
pnr
Assembly
GCA_958298945.2
Location
OY282609.1:64973710-65004764[+]

Transcription Factor Domain

TF Family
zf-GATA
Domain
zf-GATA domain
PFAM
PF00320
TF Group
Zinc-Coordinating Group
Description
This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 0.57 2.3e+03 -1.1 0.0 22 28 55 61 52 63 0.78
2 2 9.7e-17 3.9e-13 49.4 3.8 1 35 564 597 564 598 0.98

Sequence Information

Coding Sequence
ATGGCGCGAGATAGCCAAGACGCAGCGACCAGTGGTCTAAACTGGAATTGCTTGTTGTGCCATATGGTGGACACGAATAGGTCGACGCTTAGTCAGTTGGTCCCAATTCTGTTAGACATCACACTTACTCATgtTTCACCCGATGATGGATTACCGTCCGTTGTTTGTGAATCGTGCCGAATACAATTGGATTCCTGTCATAGGTTCCGGAGAACAGCAAAAGATGCTCAGAAAAAGTTAGAGAAGTTCCTCGAGTTCACAACAAAACTCTCAGGAAGTTCACAGGAGATTCGCAAAAAATCCTCGATAACATTAGAAGAGATTTTGTATCCATCATCTGCTCGACAAGCATCGGAAAGAGCGGCTGCTGCTGCATTAACCGAGCTTAGTAACACAAAAGCAGTACcgAATCAAAAAAttgcagcagcagcagcatcgTCTGTTGTGGGTAGTGCAGGTGTGATTGCCGGTGGTGGTGCCGGTACAGTAGCGAGTATTTCATCAAAATCAAATTCACCACAATCGAAATATTCAACATGTAGTAATTTAGCAGCAGCTGCTGCAGTAGCCAGTATACAACATAATAACCATGCGTCGTCGTATCTAAAGAATCATCTGATACAGCAGAATCCTCGGCCACCGCCCTATTCGGAGACAACAGATCACCAGTTGCAGCAGCATCTTGAAACGGCTGCCGTTTTAATGGACATTAGCAAAAAAGTGATCATATCGCCACCCAGTTCCAATCCGCAGTCGCCTAGTTTGTCGGCAGGTGGCGTTTATGATGCAAGTATTAACAATGTGATAGATGTGATAAATTTGAAGCGCTCAACCAGCAATGAGGAGATCGATTTATCGGTGAAACGTGCTCGACGCAGTGAGCCGTCCAATATGCATCTGCAGCAGTACCACCATCCTCACCATCACCATCATCACCAACATCATCATTCTCAGTCCCATCAGCATCAGCAGCAACAGAAGCAATTGCAAACGCATCAGGTCTCGTCGAAACATCAGCAATCTTCGTATCGGGTCCATTCGCAGCAGCACCACtttcaacagcagcaacaacaaaagcagAACTACCAGCAGAGCTTAATGGCGAATGCTGAGAAAGGTGGCTGCGTAGTCAGTGTCTTCGATCATGAAGACGAGACCAGCCAGGGCAGCCTTTCTCAAGATTCGTCAGACTCAGGACGCTTGGAAATGGACTTTAGTTCGCAGAGCAATGAGGATAACTCATCGCTGCGCACTCCCAAAATGGATATGAACGACAGCAACGATGATCCGAACGCCGGTCACGAGACACCAGACAGTATTACGTCAGACGATCATTGCACAGATCCAGCTACCACACAATTATGGCAGGCACTAGCACGTAGGACAGTTAACGGAAGTGCAAATGAGGCAGCACAATTTTTAAGTCAAATGATCGGAATGGGAGGAAATTTTCCGATTCCAATGCTTAATGTTCCAAGTGGGAATGCATCACTGGACCAACCAATAGCACTACTAAAgaaTGAAGTGTCGAACGAACGAAGCTTTAGTAAAACTTCTGGACGACGAAAACAGTCTTGCCCAATTAAAACCGAAAATCCTGAACAATTGGAATCGAACACAGTCGATACGTTAAATCAATCCGATCAGACGAAAAATACAAATTCCAGTAGTCACCAAAAAGATATGTCGTGTACAAATTGTggaacactaacaacaacaatttgGAGGCGAAATGTTCGTGGTGAGATGGTATGCAACGCCTGCGGGTTATACTTTAAACTTCACGGTGTCAATAGGCCTCATTCAATGCGAAGGGATACGATTCATACCCGACGGAGACGACCAAAAGGGGATGAGAAATCCAGTCGGAAAAagTCGAAAGTCACCGAACCAAGTACGTTAGAAATGGACGGTGGCAATGCTGAACAAAAGGCCGATTTACAAGCTGtacaaaatcataatttttttattgccttAGGACATGGTGCAACAACATTTCCAATGCCtGCTTATTCTCACTTTTTGCGTGCCTCacaaaattatgttgaaaatacgTCTGGAAACGGTAATAATAATGGCGGTAGTAAAAACGGAGGAAATGGTAATACTATCGGAATCAGCAGCAGGAGTAGTGGAGGTGTGGGCGGTAACGGTGGCAGCGGCGGCGCTGGTGTTATCGTTAGCGGTGGTAGTGTGGGCAAAGCTGCTAAGGGAAGTCCAAAATTAtcgaacaataataaaatgctGGATGCTGTCGATAGTCCCGATATTGATGATGACAACAACAACGAcgatgatgacgatgacgaGAACAAtcacagcagcagcagcaacaatcaTCATCATTCGTCCGAAGTGGAAACATGCAGTGTTCCATTAAATCTCGTTTCAAACCAAATAGGTGCTAGTGTATCGTCGCCGCAACGctga
Protein Sequence
MARDSQDAATSGLNWNCLLCHMVDTNRSTLSQLVPILLDITLTHVSPDDGLPSVVCESCRIQLDSCHRFRRTAKDAQKKLEKFLEFTTKLSGSSQEIRKKSSITLEEILYPSSARQASERAAAAALTELSNTKAVPNQKIAAAAASSVVGSAGVIAGGGAGTVASISSKSNSPQSKYSTCSNLAAAAAVASIQHNNHASSYLKNHLIQQNPRPPPYSETTDHQLQQHLETAAVLMDISKKVIISPPSSNPQSPSLSAGGVYDASINNVIDVINLKRSTSNEEIDLSVKRARRSEPSNMHLQQYHHPHHHHHHQHHHSQSHQHQQQQKQLQTHQVSSKHQQSSYRVHSQQHHFQQQQQQKQNYQQSLMANAEKGGCVVSVFDHEDETSQGSLSQDSSDSGRLEMDFSSQSNEDNSSLRTPKMDMNDSNDDPNAGHETPDSITSDDHCTDPATTQLWQALARRTVNGSANEAAQFLSQMIGMGGNFPIPMLNVPSGNASLDQPIALLKNEVSNERSFSKTSGRRKQSCPIKTENPEQLESNTVDTLNQSDQTKNTNSSSHQKDMSCTNCGTLTTTIWRRNVRGEMVCNACGLYFKLHGVNRPHSMRRDTIHTRRRRPKGDEKSSRKKSKVTEPSTLEMDGGNAEQKADLQAVQNHNFFIALGHGATTFPMPAYSHFLRASQNYVENTSGNGNNNGGSKNGGNGNTIGISSRSSGGVGGNGGSGGAGVIVSGGSVGKAAKGSPKLSNNNKMLDAVDSPDIDDDNNNDDDDDDENNHSSSSNNHHHSSEVETCSVPLNLVSNQIGASVSSPQR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-