Basic Information

Insect: Atherix ibis
Gene Symbol: L
Assembly: GCA_958298945.2
Location: OY282605.1:880416-898008[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.4e-06 0.00056 20.8 1.7 1 23 153 175 153 175 0.98

2 18 0.35 45 5.4 5.7 1 23 181 203 181 203 0.98

3 18 1.9e-07 2.4e-05 25.1 3.1 1 23 209 231 209 231 0.99

4 18 1.6e-05 0.002 19.1 0.2 1 23 237 259 237 259 0.98

5 18 0.0028 0.36 12.0 0.6 2 23 361 383 360 383 0.96

6 18 0.057 7.3 7.9 0.4 1 23 476 498 476 498 0.95

7 18 0.031 3.9 8.7 2.0 2 23 507 528 506 528 0.95

8 18 0.06 7.7 7.8 3.3 1 23 536 560 536 560 0.91

9 18 4.1 5.3e+02 2.0 0.1 1 19 565 583 565 585 0.82

10 18 0.61 77 4.7 0.8 1 23 595 618 595 618 0.96

11 18 0.0012 0.15 13.2 2.9 1 23 650 672 650 673 0.96

12 18 6.4 8.2e+02 1.4 0.9 1 23 847 871 847 871 0.83

13 18 0.00084 0.11 13.7 4.6 2 23 880 902 879 902 0.96

14 18 0.097 12 7.2 0.1 1 23 908 930 908 930 0.92

15 18 3.4 4.3e+02 2.3 0.9 2 20 938 956 938 959 0.93

16 18 4.1 5.3e+02 2.0 0.4 2 23 1045 1066 1045 1066 0.93

17 18 0.0022 0.28 12.3 0.0 1 23 1076 1098 1076 1098 0.98

18 18 0.049 6.3 8.1 0.2 1 23 1105 1127 1105 1127 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.4e-06	0.00056	20.8	1.7	1	23	153	175	153	175	0.98
2	18	0.35	45	5.4	5.7	1	23	181	203	181	203	0.98
3	18	1.9e-07	2.4e-05	25.1	3.1	1	23	209	231	209	231	0.99
4	18	1.6e-05	0.002	19.1	0.2	1	23	237	259	237	259	0.98
5	18	0.0028	0.36	12.0	0.6	2	23	361	383	360	383	0.96
6	18	0.057	7.3	7.9	0.4	1	23	476	498	476	498	0.95
7	18	0.031	3.9	8.7	2.0	2	23	507	528	506	528	0.95
8	18	0.06	7.7	7.8	3.3	1	23	536	560	536	560	0.91
9	18	4.1	5.3e+02	2.0	0.1	1	19	565	583	565	585	0.82
10	18	0.61	77	4.7	0.8	1	23	595	618	595	618	0.96
11	18	0.0012	0.15	13.2	2.9	1	23	650	672	650	673	0.96
12	18	6.4	8.2e+02	1.4	0.9	1	23	847	871	847	871	0.83
13	18	0.00084	0.11	13.7	4.6	2	23	880	902	879	902	0.96
14	18	0.097	12	7.2	0.1	1	23	908	930	908	930	0.92
15	18	3.4	4.3e+02	2.3	0.9	2	20	938	956	938	959	0.93
16	18	4.1	5.3e+02	2.0	0.4	2	23	1045	1066	1045	1066	0.93
17	18	0.0022	0.28	12.3	0.0	1	23	1076	1098	1076	1098	0.98
18	18	0.049	6.3	8.1	0.2	1	23	1105	1127	1105	1127	0.96

Sequence Information

Coding Sequence: ATGTATTTAAGAGTGTTTAAATatTTGTATTCAACGCACACATCGTCTAGTTATTCACCATCAATGTCAGAGGGCGCCGCGACCCCAAACTCGTTGATACACCAACACCACCTGCACCATCATCACCATCACCTTGTACACGCTGAGCAACGGGAAATTGATGAAGTTGAAAATAATCGTCTTAGAAAGGGCCATCGTGGGAAGATGACAACAGCGTCGAATGGATCTGGAGCAGACGGGAACGGGGAAGACGGAGAAGAGGACGAAGTTGCCGATTCGAATGACGAAAGCCGTCGTGCAGTACTGAACGGTAGCGACAGCAGTCGGGTGGTGGCGGCTCATCGCACTCGGCTCGGTGACAGTAAAGCTCCGGTGAAAATGCGAAAAATCGAAAGGGACGCGAGCAAATCGGAAAAGATGACAGCCGATGGCATTAAAACCACCTCCGACGGGTCTTATCAGTGTCAATTCTGTGATAAATCATTTCCACGACTTGGTTACCTCAAGAAGCATGAACAGAGTCATGCTGAACATCTTCCTTTCAAATGCGAATATTGTGCCCGATTATTTAAGCACAAACGCTCAAGAGATCGACACACAAAACTCCATACTGGAGACCGTCGCTATCGGTGTCCGCATTGTGAAGCAGCATTTTCACGCAGtgatcatttaaaaattcatatgaaaACGCACGACAACCAAAAGCCATTCCAGTGTACAGTCTGTAATCGTGGCTATAATACCGCAGCAGCATTAACATCGCATATGCAAAATCACAAGAAGCAAGCAGCACTTTTGAGCGGAACACCCACTTTAAATTACAGCCCACGATCAACTGGCTCAGCCTCAAGCAATGGTAGTTTTCACAAAAGACGATACGCTCTGGCAGCTGATTGTAGTCCAAACCGTATTAGCTATCGGAAACATCTTCGCAGCTCGTATATTTCTTGTATGTATTGTACAAAGTCGGATTTCCTGACCATAGAACAATTGAATAATCACATAAAAAGCATGCATGAAAATATCGCCAATGGAGAGGCCGGCGCACATCTACAACCAAACCACCTCACGTTCCATTTGTCATGCGAATACTGTACAATGAAGTTCCCCAGCATTCCGACTATGTTCCAGCATATGCGGACAACGCACATCGATCGATTAGCGAGTCCAAACTCATACTTCGAACACTTCAATAGATTGGCGGCATCTGGCACATTTAGTCCGCGCCTTATAACTAACTCTGGCACTGAAGAAACCAAAGTGAAACAGGAGGATGTCAGTCCTAAGATTGGCCAAACTGATCAGTCTGGTGGTGACTTTGTGAAGGACGAGGAGCAGATCAGCCCAACCGACTTAAGTCAGCCGAAGAATCGTTCTGCAAGCCCCGCAGATAAAATCGTCGAGGCTCCGAAGAAGCCCGGCATATTCCTTTGCAACCAGTGTAACGCGGGTTTGCCCGACTTCGAATCATTTCGATCTCATCTGAAGACACATCTGAATCAGGCCGTTACCAATCTTGTTTGCCATCATTGCGGCATAGCTCTCAGGGACCAATCGGAACACGAGCGACATGTCATTTCGCACTTTCTTATCACCAACTCCGAGTTCACGTGCCCGCACTCGTGCAACAAGACGTTCGGCAAAGTTGAGGACCTGCACAAGCACCTCTACGACAGTCACGTTCAAACCGTGTATAAGTGTACAATTTGCTCGGATCTGTTCGATACAAAGGTGGCCATTCAAGTGCATTTCGCCTGCACACATTCCAACGAAAGTAAACTCTTCAGGTGTTCAGCCTGCATGGAATTGTTCCGATCGGAAAAGGACTTTGCAAATCATGTCCGTAGTCGACACTCAAATAGTGGCTCAATTCAATGCATGTTCTGCCGTGTGGTTTGTTCCTCGGAACTCGAGATGCACTTCCATTTGGCTGCACATGCACGTCAATTTCGTTGCCCTTCTTGCCCGGAGACGTTCCACGTTGAATTTCTATTAGACCGTCACATGCAAACGCATCATACTCAAAAGGATAGCAATGTGGGTACAATGGCTGTAAATATGCCAAATACTGGTGCCTTCCACGCCCAGTCGCCATACAGCACTGGTGgtaaacagcaacaacaacagcagcatcagcagcaacagcaccagcagcagcaacaacaacaacaacagcagcaatctcagcagcaacaacagcaacacattcaaaaaaataataacaacgtGCTCGATTATCATACGTTCGCTGGAAGCAAAAGCCTTTTCGATATGCAGCCTGGAAAATTCTACAATCCCTTGCAAGTTGACACAAGCAGTGCTAGCGGAACAGTCAAGTCGGCAGCATCCCTCATGTACGGCCTAGGGCAGCGTTATTTTGATGCAAACAAAACCCTAATGGAGATGTACAATTACCATCAAGACGGTAAGGGCAGTTCGAACTATTTTCTCGGTGGTGTTAGTCAGTTCGATAGTAGCAGGACAACAACCAAAGTACAGGAAAACAAAACAACCGAGCGGAATGGTTACTCGAGTGGCTTCAGTTGCGGTATCTGTGAACGTAGCGACTTTCGTACTGAGACCGAGGTACACTCCCATAGAAAGATTGTCCACAATCTAAAAACGGGAGTCAGCTTGAGATGCGCGTACTGCAGTGGCAATTTTAAATCACGCAGTGAACTTGAACACCATATGAAAACCTGTCACAACTCCACCGGCAAACATAAATGCCTGATTTGTGATGAGATCTTCCCATCACCAGCAATTCTCGCCGAACACAAATTGCAACACTCAAAAGTAGGCCAATCCGGCAAATGTTCGCACTGCTCCTTCGCCCTAAGCGATGTTCAAGCTTTCAAGAGCCATCTACCGGAGCACAATACAGATGCACAGATACCAGTCCAATGTATATGCTGTCGTCAAACACTGCACTCCGATTTCGAAGTGGGCCTGCATGCAAAatTCCATACGAAATCGCAAAACAACAATCCAGAAAACTTGTGCGCGCTATGTTTGGAAGTGCTGCCGGTGACTCAGATGGATGCGCGGGTTTGTGAAAAATGCTGCCGGAAACACAATCTGACGTCAAAATACAACCTGCGCTATGAAAGTTCGCGTCAAATTGTCGAAAATCGATGTAATCTATGCAAGGTGATCCTACCGCATGCTCAACGACTGCAAGAACACCTGGTCGAGCACACGTTTGTCGGCTGTGAGGAGCGGGGCTACTCGTGTTACATTTGTTCGTCGGTTTTCACTGTGCCGGCAGGACTTCTCAGTCACATGATGGAGCACGGCTTAAACGCTCGTCCATACGATTGTAACTTATGCCCCGAAAAGTATTTCTTTCGAGCTGAGTTGGATAATCACCTAATCGAGCATGAACTAAACAATCCGCCTACAACAGCTCCACTTACAACAGTTTCGAATACGGAAACCAGCACCGAAACCCGCCCTGCTCCAAGCGAAAAGAACATGGACTGCGATAGGCCAACCGATCCTAGTGCGACGGCAAAGATAAAAACCGAAGCAATCGAACCGGAAACACAGGACGATGATGAAGAGTACATCGAAGTAGAGAAAGTTCCTGAGTGTCAATCCGACAACAAATCCCCGCCAGAGAACACCACCACCAATCCATCAGAAGATGATGAGAAAAAATAG
Protein Sequence: MYLRVFKYLYSTHTSSSYSPSMSEGAATPNSLIHQHHLHHHHHHLVHAEQREIDEVENNRLRKGHRGKMTTASNGSGADGNGEDGEEDEVADSNDESRRAVLNGSDSSRVVAAHRTRLGDSKAPVKMRKIERDASKSEKMTADGIKTTSDGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKQAALLSGTPTLNYSPRSTGSASSNGSFHKRRYALAADCSPNRISYRKHLRSSYISCMYCTKSDFLTIEQLNNHIKSMHENIANGEAGAHLQPNHLTFHLSCEYCTMKFPSIPTMFQHMRTTHIDRLASPNSYFEHFNRLAASGTFSPRLITNSGTEETKVKQEDVSPKIGQTDQSGGDFVKDEEQISPTDLSQPKNRSASPADKIVEAPKKPGIFLCNQCNAGLPDFESFRSHLKTHLNQAVTNLVCHHCGIALRDQSEHERHVISHFLITNSEFTCPHSCNKTFGKVEDLHKHLYDSHVQTVYKCTICSDLFDTKVAIQVHFACTHSNESKLFRCSACMELFRSEKDFANHVRSRHSNSGSIQCMFCRVVCSSELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHTQKDSNVGTMAVNMPNTGAFHAQSPYSTGGKQQQQQQHQQQQHQQQQQQQQQQQSQQQQQQHIQKNNNNVLDYHTFAGSKSLFDMQPGKFYNPLQVDTSSASGTVKSAASLMYGLGQRYFDANKTLMEMYNYHQDGKGSSNYFLGGVSQFDSSRTTTKVQENKTTERNGYSSGFSCGICERSDFRTETEVHSHRKIVHNLKTGVSLRCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCSHCSFALSDVQAFKSHLPEHNTDAQIPVQCICCRQTLHSDFEVGLHAKFHTKSQNNNPENLCALCLEVLPVTQMDARVCEKCCRKHNLTSKYNLRYESSRQIVENRCNLCKVILPHAQRLQEHLVEHTFVGCEERGYSCYICSSVFTVPAGLLSHMMEHGLNARPYDCNLCPEKYFFRAELDNHLIEHELNNPPTTAPLTTVSNTETSTETRPAPSEKNMDCDRPTDPSATAKIKTEAIEPETQDDDEEYIEVEKVPECQSDNKSPPENTTTNPSEDDEKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -