Aibi023092.1
Basic Information
- Insect
- Atherix ibis
- Gene Symbol
- ush
- Assembly
- GCA_958298945.2
- Location
- OY282609.1:70398791-70403461[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.002 0.26 12.5 0.3 1 20 255 274 255 276 0.94 2 9 0.00025 0.031 15.3 0.8 1 23 319 341 319 341 0.98 3 9 0.019 2.5 9.4 1.0 2 21 367 386 367 387 0.92 4 9 0.079 10 7.5 3.5 2 21 742 761 741 762 0.93 5 9 0.0076 0.97 10.6 0.0 3 21 801 819 799 820 0.92 6 9 0.2 26 6.2 0.1 1 23 880 902 880 902 0.94 7 9 0.011 1.4 10.1 1.4 1 23 908 930 908 930 0.99 8 9 0.00026 0.033 15.3 0.7 1 23 993 1016 993 1016 0.96 9 9 0.43 55 5.1 1.0 2 20 1167 1185 1166 1187 0.92
Sequence Information
- Coding Sequence
- ATGGCTCAGCAGTATGCTTGgcaaattcaaaataaagttaaagCTATGAACGATTTGTGTAGGGATAGTAAAGACTTTTGTGATAATAAAATCGTTGAcgaagcaacagcaacagccgCAACCGCCCTAGACTATGACATACCACAGTCATTTGCCACATCAGAACGGTTGTGTGATGAAAAATCATCGCCTAGTCCGAAATCTCCACTGGCACTATCGAATACAGTGGATAGTTCAACTCGTACAAGTGCTGTGAGATCGGGTAAGCGACGACGCTCAACATCATCCTCGTCACTGTCTCCACCCATAATGCTGAGATCATCGACATCTTGTTCGAGTTCATCGCCGACCTCTACAACATCTCCTAAGCCAATAATAAATTCGAATGCAGAAGTTAGGGCGGTGAATTTTTCGAAAGCCGGTGAAGATCAGTTGGCACAATCGAAAATAAAGCCTGATTCCACAGCAGTGCCAAAACTTCGGCTGAATGCCTTATTAGCATCGGATCCAGCCTTGAAGCCCGAAGCTAAAGACATTAAGAAATTTCAGGCTGCTGTGGAGGCTTTAGCAGGAGTGGCAGAtacttttaaccaaaaaataggtgcagatgacgatgatgatgatgacggcGATGGAGGCGGCGATGGTGGAGGCGGCAGCATAACTATTAATACTACTTTGGCCAATATCAGTGCAGCAGTAACGCATACACATAATCAACTAAAAAGTCCCATCGTTGAGGTTACACCAAGGATGCATGTTTTCATGTGTCATCCATGTGGGATACGATTCTCATCATTGTCGACACTAGAAGCCCATCAGACCTACTATTGTTCGCACAGAAAGGACAATGAAGATGAGGCGAATACCAGCAATGTATCGACAACAGAACTTCACCAAACTTCCACCGCAGCCGGTGAACCCTCAACTAAATCCGTTAAGACTGGCAAGCAATATGCTTGCACGCAATGTTCATATAGTGCCGATAAGAAGGTCTCATTAAATCGTCATATGCGAATGCATCAATCTTCTCCAGCTCCGAGTTCGAATGCATCGAATGGCGATGATAGTTCTAGTCAGcaacaACAAGTGGATCGTTACTGCTCTGATTGTGATATCCgattttcaaatatcaaaacCTATCGTGCTCATAAGCAACATTATTGCAGCTCTCGAAGAACTGAAATacaaCAAAATTCAACACCAAAATCTGATTTAAAAAAGAGTGGATCAGCTAGTCCACAGGAAAGATCAAAAACGCCTACTTTAGTTGCACCGCCACAGCCATATTTGGCATTACCGACAAATCCGATGCTTATTATTCCGTATTCGCTTATAAGAGTGGCTAGCCTATTGCCAGGACCTCTAACTTCATTAACGGCGGGTATTGCGAATCCAGACACAACTTGCTTCTCATTCGAAAATGGAGCACTACATCCGTTAGCTACCGTACTAACAACACAATCCTTAACGGACGCGGCGCCCATTTCCAATACATCCCGAACTCAACCGACTACAAACAACAATTTAACTCCAGCATCTAGCCAAGCTCCGACACCAACATCTACAAGTACTCCAAAGCCCGCAATGTTAACGGAGAAAAATGTTCGGACCCTCAGCCAACCGGAAATtcagaaaactataaaaaaggaTGCCCCTTCTAGTCGAGAATCAGCGCCATTGGATTTGACGGTTCGGAAATCACCAGTTGGAAAGTCACGACAGCGTTCCGATTCGTTTTCACCATCGACTGCAGATGATAATCGAATCGATTTGGACGCAATAATGGAGGGAAAAGAGAATTTGTCGATCAGTAGTGGGAAAATAACACCTGAACAAATAGTATGCGCTCCGTCACTGCCATCGAGTCCATCTTTAACACCATCACCGCATCGGAGACGGACCAATAGCCCCAAAAGTAGTTCTGTATCGGTATCGCCTGGACCTAATTTGAGCGGACCAGTCGCTATGAGGCCACTACTTCCATCAGAACTGGCTCTAAAACTAACCGAATCAAATATTATAGCTCCGCTACTCTCGAAACAGAATATCGAAATGGCTCTCAAGTTGAATTCGTCGGCCAATAAACTCACAGCAGAAAATTCACCAAATCCAGTTAATAATGCTACAAATCCTCTGATTAGCTTACCGACCACTCCAATTAATATGGTTCCGCCAATACCAAACGTTCAACCACAAATATACGTGAAGCAGGGCGTATCAAAGTGTAAAGAGTGCAATATTGTCTTTTGCAAATTCGAGAACTTCCTAGCGCACAAACAACACTACTGCTCAGCAAGAAACCAAGAGGATACCGAATCGAAGATTCCAACACCACCCGTAGCAGGTAATACAGCGGACGCTTCAGGACCAACGCAAATGGCATATCAACAATTAATTTGCGCTGCTTGCGGTATAAAGTACACGTCTTTGGATAATTTACGTGCTCATCAAAAGTTCTACTGCCCCAAAGGTGGTGACTTAGCATCGCAACCGCAAGCACAAGTACAGGTGCAGGCACAGACACAACCACAAGTTCAGATCGTTATAGGAAAGGAGAAATGCGGTAAATGTAAATTAATCCATGAAATAGGACATCAATGCCCAGTCAGTGGTAGTGGTAACTCACAAATTACTTACAAATGTCCCGTTTGCGATGTTGTCAGCTTGAATGCCAGCGATAGTCGGAAGCATTTAGAAACGCACGGTAGCGTTAAAGCGTTTCGATGCACCATATGCCGATACAAGGGCAATACGCTTAGGGGCATGCGTACGCATATACGAATGCATTTCGATAAGAAAACCTCCGATTTCAATGAGGAGAATTACATGTCGTGCATACTAGAAGAGGATGGCGTCGAAATTTCAAATACGCCTGCACAAGCACATCTTGGCTCACCCGCGGCATCTGCAATTTCAGCTAATATTCACCCCTCGACACTTCCAAATCAAGAGCAGAGAGGTCAACAGCAATTGTACAATTGTGAAATGTGCAATTATTCATCATCTTATAAGGGCAATGTGATGCGTCATATGAAACTAGTACATTCCCAACAATCAACACCGCCATCTACTTCGCCAGATATCGGTGAGGGTGGAGAAAGTTTAGTCCAAAACGGTGAATCGGATGTAAAAAAATCCGACGACAAaattattattaaagtcgAGCCAGTTGATATCAAGGATCCCGCCGATAGTGACTATTCAACAGAAGTCGATGAGCAAATTAATGTGAAAATCGAAGTGGACGATCGTATTGACAATAATAACATGCAGGACATCATCTTATCGACAAAATTACAGTCTctaccaaaaatccaacaacatAAATTAGCGGTTCAAGCTGCTCAGCAGCAAATCCTTTTATCAACAACACCAACAGTGGTCACCTCAATTCCGGTCGGTATAACAACACCACAGGGGCAATTACAGCAGCCACTTTCATGTACATCGCCCATCACATCCGAGGACAATTCCATCAAAAGTCATGGCCCAAAATATTGCCAGACCTGCGATATCAAATTCAAATTCACAAACTCCTACATTGCCCACAAGCAGTTCTATTGTAAAAGTAGTCGTGTCGTAGCTGCCGCCAATAGTGTTAATGTTGTTGAGCGTGCAAGCCTTAGTCCAGTTCAATCGCCTGTCATattagttacaaaaaataaggaaaatctcGAAACAGTTCTTTAG
- Protein Sequence
- MAQQYAWQIQNKVKAMNDLCRDSKDFCDNKIVDEATATAATALDYDIPQSFATSERLCDEKSSPSPKSPLALSNTVDSSTRTSAVRSGKRRRSTSSSSLSPPIMLRSSTSCSSSSPTSTTSPKPIINSNAEVRAVNFSKAGEDQLAQSKIKPDSTAVPKLRLNALLASDPALKPEAKDIKKFQAAVEALAGVADTFNQKIGADDDDDDDGDGGGDGGGGSITINTTLANISAAVTHTHNQLKSPIVEVTPRMHVFMCHPCGIRFSSLSTLEAHQTYYCSHRKDNEDEANTSNVSTTELHQTSTAAGEPSTKSVKTGKQYACTQCSYSADKKVSLNRHMRMHQSSPAPSSNASNGDDSSSQQQQVDRYCSDCDIRFSNIKTYRAHKQHYCSSRRTEIQQNSTPKSDLKKSGSASPQERSKTPTLVAPPQPYLALPTNPMLIIPYSLIRVASLLPGPLTSLTAGIANPDTTCFSFENGALHPLATVLTTQSLTDAAPISNTSRTQPTTNNNLTPASSQAPTPTSTSTPKPAMLTEKNVRTLSQPEIQKTIKKDAPSSRESAPLDLTVRKSPVGKSRQRSDSFSPSTADDNRIDLDAIMEGKENLSISSGKITPEQIVCAPSLPSSPSLTPSPHRRRTNSPKSSSVSVSPGPNLSGPVAMRPLLPSELALKLTESNIIAPLLSKQNIEMALKLNSSANKLTAENSPNPVNNATNPLISLPTTPINMVPPIPNVQPQIYVKQGVSKCKECNIVFCKFENFLAHKQHYCSARNQEDTESKIPTPPVAGNTADASGPTQMAYQQLICAACGIKYTSLDNLRAHQKFYCPKGGDLASQPQAQVQVQAQTQPQVQIVIGKEKCGKCKLIHEIGHQCPVSGSGNSQITYKCPVCDVVSLNASDSRKHLETHGSVKAFRCTICRYKGNTLRGMRTHIRMHFDKKTSDFNEENYMSCILEEDGVEISNTPAQAHLGSPAASAISANIHPSTLPNQEQRGQQQLYNCEMCNYSSSYKGNVMRHMKLVHSQQSTPPSTSPDIGEGGESLVQNGESDVKKSDDKIIIKVEPVDIKDPADSDYSTEVDEQINVKIEVDDRIDNNNMQDIILSTKLQSLPKIQQHKLAVQAAQQQILLSTTPTVVTSIPVGITTPQGQLQQPLSCTSPITSEDNSIKSHGPKYCQTCDIKFKFTNSYIAHKQFYCKSSRVVAAANSVNVVERASLSPVQSPVILVTKNKENLETVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -