Basic Information

Insect: Atherix ibis
Gene Symbol: zfh1
Assembly: GCA_958298945.2
Location: OY282607.1:53268208-53270407[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00024 0.03 15.4 0.5 2 23 231 253 230 253 0.95

2 9 2.5 3.2e+02 2.7 0.1 6 23 262 279 262 279 0.97

3 9 2.4e-05 0.0031 18.5 3.9 1 23 285 308 285 309 0.96

4 9 0.00011 0.015 16.4 2.4 1 23 318 340 318 340 0.94

5 9 0.038 4.8 8.4 0.3 3 23 350 371 348 371 0.95

6 9 0.17 21 6.4 2.4 1 23 377 399 377 399 0.94

7 9 0.00064 0.082 14.0 1.9 2 23 412 434 412 434 0.95

8 9 0.00015 0.019 16.0 2.8 1 23 440 462 440 462 0.98

9 9 0.00037 0.048 14.8 6.3 1 23 468 491 468 491 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00024	0.03	15.4	0.5	2	23	231	253	230	253	0.95
2	9	2.5	3.2e+02	2.7	0.1	6	23	262	279	262	279	0.97
3	9	2.4e-05	0.0031	18.5	3.9	1	23	285	308	285	309	0.96
4	9	0.00011	0.015	16.4	2.4	1	23	318	340	318	340	0.94
5	9	0.038	4.8	8.4	0.3	3	23	350	371	348	371	0.95
6	9	0.17	21	6.4	2.4	1	23	377	399	377	399	0.94
7	9	0.00064	0.082	14.0	1.9	2	23	412	434	412	434	0.95
8	9	0.00015	0.019	16.0	2.8	1	23	440	462	440	462	0.98
9	9	0.00037	0.048	14.8	6.3	1	23	468	491	468	491	0.95

Sequence Information

Coding Sequence: ATGTTCTGTGGAATTTGTTTACGAAATGACTCTTGTACCATTGAAATATTTAGTGAACAAGGTATACAATTGGAAATAGCATCACTTATTAAACGATACTTGTGGTTCaagAATTTGGATAGTaattcacatttaaaaaaaatatgcaactcCTGCTGGCAGAGCATTGCTAGTTTTCATGTATTCTATACAACAGTCGAAGCAgctcataagaaattttccagtcaCTTCAATTTGAATTCTAATAATGATGGAGACCAGAGATATACAAAGACGTTAAGTGagtttattaccgaaaattcttgTAATAATGAAAATCAAAAGCCTATAAGAGTAGTGAATAAATTCGGAGAAGAATACAATATTGTCGAAATCAAATCTGAACCACCTTTTTCGTCGGATATTTTGCAATTGCTTTCACAAGGAAAAGATGACAattttgaaGGAGTTACCTACAGTGATGATATTTTACCAGAAGGTGCAGAAATGTTAATTAAACAGGAAACAGAAGAAGTTTACCAACAGAATTATGATCAGGCGTTATCAGattttattgaatttgaaaatgataatCTTCAAAGTACTACACTGAATTCGCTTAATAAAAATGCTACAGCGTCACGAAAAGTTGCATTATTGGATGATAAGATGCAAAATGAAGACGAATTAATAGCAAGATTTGTTAAATTAGAATGTGAAAAATGTCCAATTGCTTTTAGTAGATTTCAAGATCTAGCTAAACATTATCATATGGTTCATAATATTAGTGGTTATGCAAGATGCTGTGACAAAAAGTTGTCTAGTCGAGCGTATATTCTGGATCATATTAATTTTCACATAAATCCGGATATATACAAttgcAAAGTATGCACTAAAGCGTTTCAGTCACAATATTCTCTACGAACCCACATGAATCTTAAGCATCATAGCACTTTATCAGCCCCGAAGATATTTGATTGCAAACATTGtgcaaagaaattttcaaaccaAAAAGACTTAAACGAGCACGCGTCAGAACATTTATCCAAATcaaataatagtttattttgtGTAGAATGTCGAAAATTtttcccaTCGGAAGTAGGTATGCAAATGCATTACAACGTATTCCATAGAAAGCCGTTAGGTCATATTTGTCATGTTTGTGGAATGGTCATTCGATGCAAAGCAGAATTCTTAAGACATATGGCTGATCATACCGAAAAATTGGGATCAATTGTAGTCAATGAACCGGTTTGCCGAATATGTGAGAAAACATCGACGTCAGTGAAAAATTTACGACACCACATTAAATACGTACATTCGCCGAATCGTCCACACAAGTGCACAGTTTGCCAAAAAGGATTTAAACTTcgacaaaaattaaaagaTCATATAGCGACACATGCTGTGGGTTCGAAATTTAAATGTCCATATTGCTCAAAGAGGTTCCGAAGTAAATTGCACTTATACTCACATAAATATCGAATGCATAAAGTTCAATATGCTCAAGAAAAACTGAACAGTACAAACTCCTCAGATTTATATGGTGATAAAGAACAAACATTCGATGATGCTACAAATTTAAGTGATGGTACCATTTCTCCAGACGATTTCTTTGTGCTTTCAAATTCCAATTAA
Protein Sequence: MFCGICLRNDSCTIEIFSEQGIQLEIASLIKRYLWFKNLDSNSHLKKICNSCWQSIASFHVFYTTVEAAHKKFSSHFNLNSNNDGDQRYTKTLSEFITENSCNNENQKPIRVVNKFGEEYNIVEIKSEPPFSSDILQLLSQGKDDNFEGVTYSDDILPEGAEMLIKQETEEVYQQNYDQALSDFIEFENDNLQSTTLNSLNKNATASRKVALLDDKMQNEDELIARFVKLECEKCPIAFSRFQDLAKHYHMVHNISGYARCCDKKLSSRAYILDHINFHINPDIYNCKVCTKAFQSQYSLRTHMNLKHHSTLSAPKIFDCKHCAKKFSNQKDLNEHASEHLSKSNNSLFCVECRKFFPSEVGMQMHYNVFHRKPLGHICHVCGMVIRCKAEFLRHMADHTEKLGSIVVNEPVCRICEKTSTSVKNLRHHIKYVHSPNRPHKCTVCQKGFKLRQKLKDHIATHAVGSKFKCPYCSKRFRSKLHLYSHKYRMHKVQYAQEKLNSTNSSDLYGDKEQTFDDATNLSDGTISPDDFFVLSNSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -