Basic Information

Insect: Atherix ibis
Gene Symbol: -
Assembly: GCA_958298945.2
Location: OY282606.1:119139966-119143765[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0012 0.15 13.2 0.1 2 20 178 196 177 198 0.93

2 14 0.45 58 5.1 4.5 1 23 225 247 225 248 0.95

3 14 0.032 4.1 8.7 0.2 1 23 254 276 254 276 0.91

4 14 2.2e-05 0.0028 18.6 1.3 1 23 281 303 281 303 0.98

5 14 0.087 11 7.3 4.9 1 23 326 348 326 348 0.96

6 14 8.4e-05 0.011 16.8 1.6 2 23 355 376 354 376 0.97

7 14 9.6e-05 0.012 16.6 2.7 1 23 382 404 382 404 0.98

8 14 4.5e-06 0.00057 20.8 2.7 1 23 410 432 410 432 0.97

9 14 2.5e-05 0.0032 18.5 2.1 1 23 438 460 438 460 0.98

10 14 5.4 6.9e+02 1.7 0.1 6 12 473 479 471 481 0.83

11 14 0.46 58 5.0 0.0 2 19 590 607 589 609 0.91

12 14 1.2 1.5e+02 3.8 3.7 1 23 637 660 637 660 0.92

13 14 0.18 23 6.3 0.4 1 23 666 688 666 688 0.91

14 14 1.3 1.7e+02 3.6 0.9 1 8 693 700 693 701 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0012	0.15	13.2	0.1	2	20	178	196	177	198	0.93
2	14	0.45	58	5.1	4.5	1	23	225	247	225	248	0.95
3	14	0.032	4.1	8.7	0.2	1	23	254	276	254	276	0.91
4	14	2.2e-05	0.0028	18.6	1.3	1	23	281	303	281	303	0.98
5	14	0.087	11	7.3	4.9	1	23	326	348	326	348	0.96
6	14	8.4e-05	0.011	16.8	1.6	2	23	355	376	354	376	0.97
7	14	9.6e-05	0.012	16.6	2.7	1	23	382	404	382	404	0.98
8	14	4.5e-06	0.00057	20.8	2.7	1	23	410	432	410	432	0.97
9	14	2.5e-05	0.0032	18.5	2.1	1	23	438	460	438	460	0.98
10	14	5.4	6.9e+02	1.7	0.1	6	12	473	479	471	481	0.83
11	14	0.46	58	5.0	0.0	2	19	590	607	589	609	0.91
12	14	1.2	1.5e+02	3.8	3.7	1	23	637	660	637	660	0.92
13	14	0.18	23	6.3	0.4	1	23	666	688	666	688	0.91
14	14	1.3	1.7e+02	3.6	0.9	1	8	693	700	693	701	0.91

Sequence Information

Coding Sequence: ATGGCTATTTATTTCGTCTTGAAATCACCTTACACGAGTCGTGGTCCGTGGTCTGATAAAACTAGATTTTATGgaataattcaatttgTTGAGAAATACGATGGCCTGCCTGAGTACTTATGCGATAAATGTATTGAAATTTTAGagattattcgtaattttaaaGCCAAATGTGAGGAAACAGACCTATTTTTCCGAAAACTATTATCTTAttcatataaagaaaattatgaagaaaCAGAAGTTGGTTTAACAATAGAGACTCTTGATTATCCGGCAAACAACTATGAAGTCAGTAGTGCTCAAGGTAGTTCGGAAGATTTGTCTCCCGAAATTGAGGAAGAACTCGAAGAAGAGTTCATTGTGGACTCATTATCAGATAATGATAATTTAATTCTTCAAGATGATGAAATTCAAGGTGTTAATAATTCAATGATTCCTTCAGAAATAGTTATTgatagtaatcttattagaaaaactgaatctaaagaaataaaacaaataggACTTCCGAATGTTGAAAACAGCTTAAAATGTGACATTTGCGATGAAGAATTTGAAAATAGCGAAAAATTAATGAATCACAAAGTAAAGGCGGGTAAATGTAATAAATGGTTGCTTAAAAGGAACAATTTCAACGTTTACTTGGATTCTAAAGGATATGTTGAATATTATTCTTGCGCTCTCTGTTCAAACAAGTATATTTATCGTCAAAGTCTAAGTCGACACTTTAGATTTCACCACAAGAAAGAGCTACCATTCGTATGTGCATTATGTGGTGAACGATTCCAAACTTCTGAAGAATTTGAACCCCATAAGCTAttacattcaaaaaaatgttattcatgTGACATATGTGGCAGAAAGGTTACAACACTTCGAAATTTGAAAATGCATAAAAAGTCCCACGTTCCTAAAATAAACATGAAAAAGCCAGTAAATCGAGAGTATGCATCTAGCGACTCCGAAGATACATATTTGTGCCCACACTGtgggaaaatatcgaaaaagctGACGTCGCATTTTAACCATTTACGGACACATTCAGATGGAATGTCATTGCAATGTCCTATttgcttaagaaaatttaaacatCAGAATGTTCTAAATAGCCATTTAAGAATCCATACAGGCGAAAAGCCATTTGAATGTGATGTATGTTCAATGACATTTCGACAATCCCAGCACCTAAAAGGGCATAAACTAACACATTCCGGCCTTAAGCCACATCAGTGCAAGTATTGCAATAAGACTTTTGCTCTGAAAGGCAATTTAAGAGTGCATGAAAGGCTACACACAGGAGAAACACCGTATCAGTGTTCAGAATGCGGCagagaatttcaaaatttgaataaattgaaacgGCATAAAAACAATCATTTGGCAGAAAAAGCTGATGGCCTACCTGAATACCTTTGTGGTAAATGTTTTAATTCACTGGAAATCGTCTACAAATTTATAATGCAGTGCAAGACAGCTGATCGATATTTTCGAGAGCAGATACTTgacgaaaaacaaaattcttcgAACGAAAAtgatatgaatattaaaattgaagccCTTGAAGAAATAACCTCTAGTTGGGAAATTGACTCAAATTGTTCGGAAGAAATGGTATCCAATGATGGCGAATTTGAAAACTTTGAAGTTGTTGATCATTGCAATGACACATCAAATACAATTGATCATACAGTCTCATTAAAATTGCCTACGATTGCGAAGATATTTGACCCAAAATCGGAATGTCTCGATGAAGTCAATATGTTAAAATGCAGAATATGTGCTACCTCCTTTGATAATATTGAAGAATTAATTGGACACAAAGAGTGTGCCGGCAAATGTAATAAATGGGTTATTAAAAAACGATACTACAATGCGTATATTAATACAAATGGGCGTCCAGAGTACTATAAATGCGATATATGTCAACATAGATACTTATATCTTCGAACACTCAGCCGACATTTCAGCGTTTACCATAAAGAGGATATACCATTTAATTGTATAGTGTGTGGAGATCGTTTTAGCGATGCCAAAGAATATGAAGACCACAAAAAACAACATACTGAGAGAAAATATGTTTGTGATATTTGTGGGAAAAAGTaa
Protein Sequence: MAIYFVLKSPYTSRGPWSDKTRFYGIIQFVEKYDGLPEYLCDKCIEILEIIRNFKAKCEETDLFFRKLLSYSYKENYEETEVGLTIETLDYPANNYEVSSAQGSSEDLSPEIEEELEEEFIVDSLSDNDNLILQDDEIQGVNNSMIPSEIVIDSNLIRKTESKEIKQIGLPNVENSLKCDICDEEFENSEKLMNHKVKAGKCNKWLLKRNNFNVYLDSKGYVEYYSCALCSNKYIYRQSLSRHFRFHHKKELPFVCALCGERFQTSEEFEPHKLLHSKKCYSCDICGRKVTTLRNLKMHKKSHVPKINMKKPVNREYASSDSEDTYLCPHCGKISKKLTSHFNHLRTHSDGMSLQCPICLRKFKHQNVLNSHLRIHTGEKPFECDVCSMTFRQSQHLKGHKLTHSGLKPHQCKYCNKTFALKGNLRVHERLHTGETPYQCSECGREFQNLNKLKRHKNNHLAEKADGLPEYLCGKCFNSLEIVYKFIMQCKTADRYFREQILDEKQNSSNENDMNIKIEALEEITSSWEIDSNCSEEMVSNDGEFENFEVVDHCNDTSNTIDHTVSLKLPTIAKIFDPKSECLDEVNMLKCRICATSFDNIEELIGHKECAGKCNKWVIKKRYYNAYINTNGRPEYYKCDICQHRYLYLRTLSRHFSVYHKEDIPFNCIVCGDRFSDAKEYEDHKKQHTERKYVCDICGKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -