Basic Information

Insect: Atherix ibis
Gene Symbol: -
Assembly: GCA_958298945.2
Location: OY282607.1:31811187-31815126[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.2 6.6e+02 1.7 0.3 2 23 228 250 227 250 0.91

2 18 0.0041 0.52 11.5 3.0 3 19 294 310 293 313 0.92

3 18 0.13 17 6.8 2.5 3 23 325 345 323 345 0.88

4 18 0.015 1.9 9.7 0.1 3 23 354 375 352 375 0.95

5 18 5.7e-05 0.0073 17.3 2.6 1 23 381 403 381 403 0.96

6 18 0.00012 0.015 16.3 0.8 1 23 409 431 409 432 0.96

7 18 1.4e-05 0.0018 19.2 1.3 1 23 438 460 438 460 0.98

8 18 0.0043 0.54 11.4 0.3 1 23 510 532 510 532 0.98

9 18 0.044 5.6 8.3 1.4 1 23 537 559 537 559 0.97

10 18 9.2 1.2e+03 0.9 1.5 1 23 575 600 575 600 0.94

11 18 5.3 6.8e+02 1.7 2.2 2 13 607 618 606 629 0.85

12 18 0.0036 0.45 11.7 0.3 1 23 634 657 634 657 0.95

13 18 0.00019 0.025 15.7 0.4 2 23 663 685 662 685 0.93

14 18 3.2e-05 0.0041 18.1 0.6 1 23 688 711 688 711 0.97

15 18 0.41 52 5.2 2.9 1 23 717 740 717 740 0.93

16 18 0.0013 0.16 13.1 0.2 1 23 746 768 746 768 0.98

17 18 1.5e-07 1.9e-05 25.4 1.5 1 23 774 796 774 796 0.99

18 18 1.5 1.9e+02 3.4 0.4 1 23 802 827 802 827 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.2	6.6e+02	1.7	0.3	2	23	228	250	227	250	0.91
2	18	0.0041	0.52	11.5	3.0	3	19	294	310	293	313	0.92
3	18	0.13	17	6.8	2.5	3	23	325	345	323	345	0.88
4	18	0.015	1.9	9.7	0.1	3	23	354	375	352	375	0.95
5	18	5.7e-05	0.0073	17.3	2.6	1	23	381	403	381	403	0.96
6	18	0.00012	0.015	16.3	0.8	1	23	409	431	409	432	0.96
7	18	1.4e-05	0.0018	19.2	1.3	1	23	438	460	438	460	0.98
8	18	0.0043	0.54	11.4	0.3	1	23	510	532	510	532	0.98
9	18	0.044	5.6	8.3	1.4	1	23	537	559	537	559	0.97
10	18	9.2	1.2e+03	0.9	1.5	1	23	575	600	575	600	0.94
11	18	5.3	6.8e+02	1.7	2.2	2	13	607	618	606	629	0.85
12	18	0.0036	0.45	11.7	0.3	1	23	634	657	634	657	0.95
13	18	0.00019	0.025	15.7	0.4	2	23	663	685	662	685	0.93
14	18	3.2e-05	0.0041	18.1	0.6	1	23	688	711	688	711	0.97
15	18	0.41	52	5.2	2.9	1	23	717	740	717	740	0.93
16	18	0.0013	0.16	13.1	0.2	1	23	746	768	746	768	0.98
17	18	1.5e-07	1.9e-05	25.4	1.5	1	23	774	796	774	796	0.99
18	18	1.5	1.9e+02	3.4	0.4	1	23	802	827	802	827	0.95

Sequence Information

Coding Sequence: atgccgcgaagaagaaagaaaaacacaGTGAATTGTGTTTGCTGTTCTGAACCTCTAGAGAAACCTTATCAGCTGGTATTCGATAAGACGGGTGTGGAGTTGAAGTTAAAACAGCTTTTGCTAGattgttttaatttgaatataacaaaagataaaaacaaaGTTCAAGCGGTATGCAAGGATTGTAGTCATGATCTAATTGAGGCATTCGATTTACAACAGAAACAAGCCAAAGATAAATCTCGAAATAGTGAAGTGACAGAATCTATTATAGATTCTATTAAATTATCTGGTAACCAAAAAGATATAGAAGATGATACCGTGGATGTCGTTGATAATGGAGAGACTGAGGATGATGAATGTTTCAGTGAAAGTGAATATAAAACGGAAATGTTGGAAGAAGCAAACGAAATTGTTGAAACCTATGAATTTTATAGTGGaaatgatgataataatattgACATTAAAATAAAGGAAGAAATTGAAAGTGAAACTGAAATACAGGATGATGATGAACCAGACTTCCTTGGTTTCAATCTTGAGTGCCAGGAATCTGAAACGTTTGAACAACAGAATGAGCCAACAACCATCAAACCGACATCGGAGCAAATCAATTTTAGGGAATACAAAGACAAGGTTCTTTGTAGTAAATTTGATGATATAACATTCCCAAATGGAATTGAGTGTCGGATTTGTAATGAAATTCTCGATAGCCATGTGTCGATTTTACAGCATACAGAAATGAAACATTGTATTGAAGAGTTTGCTTACATGTGCATCATTGAGGATTCTTGTGAACCACAAAAAAGCTATCAAgatttatgttttcatttagtttttaaacACTATGATTTGGAACGattAACAATATTTGCTATGTGCCCACATTGTGGGAAACGTTTTAGCAATTACCTACTTTATAATAAGCATTCTTGTTATTTAGCTAAAAATGCACCACGAGGTAAATTGGATTGCGATAAGTGTGATAAGGAATTCAAGTCAAATAAACGATACCGTTTCCATTTGCAATTCCATTTGCAATCACATCGTCCAATGGCTTGTCTAATATGTGATTTTATGTTTGTTGATGAAGATGAATTCTTCGAACATGTTAAATATTCACATGAAAAGGAACTAAAATTCGTATGCTTCCAatGCGATAAAAAATTTACCTCGCAAAAGAATTTCAACGAACATGAAAACCTTCATAAAATTGTTCGTAAATATAAGTGCGATATTTGCTCAAAAGCTTATATGGATAAGCAGATGTTAATGGAGCATATTcAAGCACACCATAGTGACTGTAGCCCTTTCCAATGCAACATTTGcggtaaatatttgaataagaaGACTCTTCTTAATAAGCACATCATGTCACATAATATGCCTGAAGATAAAGTTGTGCAATATTGTAGTTTATGCGGATTAGTTCCAGAAAATGAAGCTGACGGTTTAaaaCATATTGAGAAGAAACATCCTGAAAAGAAGACCGATATTCAATTGGATTGTTGTGTCATAGATAAAGTTTATGTGTGCGAATATTGTGAAGATGCTTACAAATCAACTGAGGAGCTAAGGATTCATCGACTTCGGCATTcgaagaaagaatttttttgtgacaTGTGTCCGTTAGTCTATAATGAATACAAACGTTTGAAAACTCACAAATTAACACATGCAAACTATGTCGATAAACGTAGTACATTTCCAGTAATGAGACATTACATGTGCGacattaatgATTGTACAAGTTCATATTTGCATTGGACAAGTTTGGGTTCACATAAACGTAATAAACATAATTCAAATGAAGTTAAATCATGTCCAATTTGTTTTGCATCCTTTAAGAACTCgcTATCGTGTTCTTTTCATATGAGTAAAAATCACAGTGAATCGAAATATTCGTgtcaattttgtgaaaaaatatacaattcgaAAATGGCACTAGCGGTGCACGTTGCTCGGAAACATAATACAAccAAAATACAATGCGATGAATGTGAAAATACATATTCGAATAATTATGATTTACGAAGGCATAAAAACGCTGTTCATCAAATATTCAAATGTGATATTTGCGATAAAGTtatgaaaaatagtaaaaatttaattgttcatAAGAAAATGGTTCATGAGAAAGTAAAACGGTTTTTCTGCAGTATCTGTAATAAgggatattttaataattgtgatCGACTTCAACATGAGTCTacggttCATagcaaattgaaaaagtttaagTGTAATATCTGTCCGTATGCAGCTATCTATAAACAATCACTAAATAGTCATATCCTTTTACATTTTAACGAATTTCCGTACAAATGTACATTGTGTCCAAAAGCATTTAGACGATCGTATGCTTTAACATTGCATATGAAACGACACAATAATGATAGAGAgTTCAAGTGCCCGTACGAAGGTTGTCATTCTGCCTATCCAATACAAGGAATTCTTAATACTCATATAAAGTCAAAACATGCGAACGGAcAAACTGGTGTATCACGGAGACGAAGAACAATTGGTAATATGTCAGATTCGGCAAAACGTAAAAGATTAGTAACGCCACGATCGACTACGTTTGTAGACGATGATGATGGATTAGATGATGGTGTTATTGGTAATCCACCTCAACGAACTGATAATGAAGATGAACTCGAGGATGATCTTGGTGATACTGTTAGTCAATGTTATATACTTGAAGCATCACCAGCGGTTATCGTACAACGCAATAAAATTGATCATGATTATATTGTACGagctgaagaagaaaaaattttcgaaaatgttattGAAGAATACGAAATAGACGGTAcagaaataattcaatatactactgatTGTATACCAGCTAtagattaa
Protein Sequence: MPRRRKKNTVNCVCCSEPLEKPYQLVFDKTGVELKLKQLLLDCFNLNITKDKNKVQAVCKDCSHDLIEAFDLQQKQAKDKSRNSEVTESIIDSIKLSGNQKDIEDDTVDVVDNGETEDDECFSESEYKTEMLEEANEIVETYEFYSGNDDNNIDIKIKEEIESETEIQDDDEPDFLGFNLECQESETFEQQNEPTTIKPTSEQINFREYKDKVLCSKFDDITFPNGIECRICNEILDSHVSILQHTEMKHCIEEFAYMCIIEDSCEPQKSYQDLCFHLVFKHYDLERLTIFAMCPHCGKRFSNYLLYNKHSCYLAKNAPRGKLDCDKCDKEFKSNKRYRFHLQFHLQSHRPMACLICDFMFVDEDEFFEHVKYSHEKELKFVCFQCDKKFTSQKNFNEHENLHKIVRKYKCDICSKAYMDKQMLMEHIQAHHSDCSPFQCNICGKYLNKKTLLNKHIMSHNMPEDKVVQYCSLCGLVPENEADGLKHIEKKHPEKKTDIQLDCCVIDKVYVCEYCEDAYKSTEELRIHRLRHSKKEFFCDMCPLVYNEYKRLKTHKLTHANYVDKRSTFPVMRHYMCDINDCTSSYLHWTSLGSHKRNKHNSNEVKSCPICFASFKNSLSCSFHMSKNHSESKYSCQFCEKIYNSKMALAVHVARKHNTTKIQCDECENTYSNNYDLRRHKNAVHQIFKCDICDKVMKNSKNLIVHKKMVHEKVKRFFCSICNKGYFNNCDRLQHESTVHSKLKKFKCNICPYAAIYKQSLNSHILLHFNEFPYKCTLCPKAFRRSYALTLHMKRHNNDREFKCPYEGCHSAYPIQGILNTHIKSKHANGQTGVSRRRRTIGNMSDSAKRKRLVTPRSTTFVDDDDGLDDGVIGNPPQRTDNEDELEDDLGDTVSQCYILEASPAVIVQRNKIDHDYIVRAEEEKIFENVIEEYEIDGTEIIQYTTDCIPAID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -