Aibi005920.2
Basic Information
- Insect
- Atherix ibis
- Gene Symbol
- B0310.2
- Assembly
- GCA_958298945.2
- Location
- OY282605.1:124141304-124144262[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00017 0.022 15.8 3.6 1 23 372 394 372 394 0.98 2 10 4.1e-06 0.00052 20.9 3.5 1 23 400 422 400 422 0.98 3 10 3.9e-06 0.0005 21.0 0.1 1 23 428 450 428 450 0.98 4 10 0.00038 0.048 14.7 0.3 1 23 456 478 456 478 0.98 5 10 7.3e-06 0.00094 20.1 5.9 1 23 484 506 484 506 0.98 6 10 0.0028 0.35 12.0 0.1 5 23 514 532 513 532 0.93 7 10 1.4e-05 0.0017 19.3 1.8 1 23 538 560 538 560 0.99 8 10 1.4e-05 0.0018 19.2 0.5 1 23 566 589 566 589 0.96 9 10 0.00055 0.07 14.2 1.1 1 23 595 617 595 617 0.96 10 10 0.0069 0.88 10.8 1.6 1 23 623 646 623 646 0.98
Sequence Information
- Coding Sequence
- ATGCATGTGAAAGAAAAGAGTATGATTAATATAAAACATCaaGAACAAATATGTCGAAAGTATGGCAGCGAATCTGAATTTGAAAGATTAAGTCCAGCccagaaaattattgttttaaaatatgctCGAacgaataataatttcatttttaATCCAGAGAATTATCCCAAAATACTAATTCAACTTTCAACAGAACTGAGTAAACTATCTAAATTCATACCTGTACCgaatttgttgttattggtaAAAGATTGGGTAAATGATGTCAGTAATAAAAAACAACTGTCCACATGCGAATTCGAAGACAAGGAACTGTTAGGCCTAATTGATATGAATTATGCCGATACTTTATCACAAACTGAATTATCTTGTATACTGGATCATTTAGAAATAGCTACTAATGCGCCACAAGTTTGGACAACAATTTCCTTAGAATTAGAAGCTTTAGGTTCAACCAATTTTGACCCTACTTATTgtgaaatgACTTTTGAAagttggaataaaaaaattaaaaggaaaaaagagATTTTGGATGAagtaaaattaactgaaattgagagggcgaatttttttaatgacttagAAAAAAGATTACTTCAACTAGTCGGTAATAATGATATAACGCGAATAAAAAATGACGAAGACTGTATTGCAATATGTCGTGTCTGTTTATCGGAAACTGGAGAAAATTTAAGATATATAcatgaaaataactttttatgttCTACTATTGCAGAGAGAATATGTGAATGTTCTTGTATAGATAAGatAACCAAAGATGATGGATATCCTCAGTTTATATGTGGAACTTGTTTAGAACTGTTAGAAAAtgcacataaatttaaaaaactatgcGAACAATCTGCAAATCAATTAAGAGATCAAATGAAGGAACCATTCAAAGAAGAATATATTGAATATGtttttgaagaagaagataTACAAGATCAATTTACCGGTACGGATCCTTCtgaaaaagtacaaaatatttCTGATGATGACACAAATGTTACTGAAACAGTTTCGTCTGAGTTGAATCCAActgacatttttataaataataatgatcaaGATAGGTTAAATATATCTACAATATGTACTGAAACAGCAGTTCATCAATGTGAAACATGCGGTATCATATGTTATAATGAGGGTTCACTTAAAAAGCACACACGTacacatttaattaaaagacCATATCATTGTGAAATATGTCAGAAAGacttcaaaacaaaattatcattgAAAATTCATATGCGATCGCACACGGGAGAACGTCCTTATGTTTGCGAGgtgTGTGGAAAAGCATTTACTCAAGACTCAAGCCTAATATACCATCGTTCAATACattctggagaaaaaaaatatatgtgcgACCTATGCGATTATCGAGCACGTAACATAAacgatttaaaaattcatattcgcAAACACACTGGTATTAGGCCGTATCATTGTACTCAATGCTCATCGTCATTTACCACGTCTAGCAATTTGAAGAAACATTTACGTCGACACACGGGAGACAAAAATGTTCAGACATGCGGAAAAGCTTTTAAAACATGGAGCGCTGTTAGCAATCATCGCGTAATTCATTCAGAACTAAAACAGTTTACATGTCCACATTGTCCTTATAAAGGCAGTACAAAggctaatttaaaaatacatagtCGCACTCATACTGGAGTACAACCATATGCTTGCAATGTGTGTCCACTTAAATTCAGTACCGCtagtaatagaaaaaaacatattaaaaatgttcatcaaAAAGTGAAATCACATGAGTGCGGTAGTTGTGGAAGATCTTTTTTTTCTCGGGAATCAGCCAGGAAGCATATGGTTATACATACAGGTTTAAAGCCTTACACTTGCACAGAATGTCATATGGCTTACGGATGGTACAATGGTTTACAGAAACATATGAAAACGCAACATCAAGGTGTCAAAATGCCAACAGAAAAGCATTTTGTAGATttgatggaaaaataa
- Protein Sequence
- MHVKEKSMINIKHQEQICRKYGSESEFERLSPAQKIIVLKYARTNNNFIFNPENYPKILIQLSTELSKLSKFIPVPNLLLLVKDWVNDVSNKKQLSTCEFEDKELLGLIDMNYADTLSQTELSCILDHLEIATNAPQVWTTISLELEALGSTNFDPTYCEMTFESWNKKIKRKKEILDEVKLTEIERANFFNDLEKRLLQLVGNNDITRIKNDEDCIAICRVCLSETGENLRYIHENNFLCSTIAERICECSCIDKITKDDGYPQFICGTCLELLENAHKFKKLCEQSANQLRDQMKEPFKEEYIEYVFEEEDIQDQFTGTDPSEKVQNISDDDTNVTETVSSELNPTDIFINNNDQDRLNISTICTETAVHQCETCGIICYNEGSLKKHTRTHLIKRPYHCEICQKDFKTKLSLKIHMRSHTGERPYVCEVCGKAFTQDSSLIYHRSIHSGEKKYMCDLCDYRARNINDLKIHIRKHTGIRPYHCTQCSSSFTTSSNLKKHLRRHTGDKNVQTCGKAFKTWSAVSNHRVIHSELKQFTCPHCPYKGSTKANLKIHSRTHTGVQPYACNVCPLKFSTASNRKKHIKNVHQKVKSHECGSCGRSFFSRESARKHMVIHTGLKPYTCTECHMAYGWYNGLQKHMKTQHQGVKMPTEKHFVDLMEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -