Aibi021724.1
Basic Information
- Insect
- Atherix ibis
- Gene Symbol
- -
- Assembly
- GCA_958298945.2
- Location
- OY282609.1:32898909-32903399[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00072 0.092 13.9 2.7 1 23 22 44 22 44 0.98 2 15 0.0089 1.1 10.4 1.8 1 23 52 75 52 75 0.93 3 15 1.6 2.1e+02 3.3 0.3 1 23 78 101 78 101 0.90 4 15 9e-05 0.011 16.7 0.1 2 21 110 129 109 130 0.93 5 15 6.2e-05 0.0079 17.2 0.3 1 23 138 160 138 160 0.98 6 15 0.00028 0.036 15.1 3.7 1 23 166 188 166 188 0.98 7 15 4.5e-05 0.0057 17.7 0.8 1 23 194 216 194 216 0.97 8 15 3.1 4e+02 2.4 2.6 1 23 618 641 618 641 0.94 9 15 0.00023 0.029 15.4 1.1 1 23 663 685 663 685 0.97 10 15 0.00025 0.032 15.3 0.1 2 23 721 743 720 743 0.96 11 15 0.00028 0.035 15.2 1.5 1 21 763 783 763 784 0.95 12 15 0.00069 0.088 13.9 5.1 1 23 792 814 792 814 0.98 13 15 1.1e-06 0.00014 22.7 0.5 1 23 820 842 820 842 0.96 14 15 5.3e-05 0.0068 17.4 0.7 1 23 848 870 848 870 0.97 15 15 0.011 1.3 10.2 1.5 1 22 876 897 876 897 0.94
Sequence Information
- Coding Sequence
- ATGGGCGACCAAAACCGGTTAAGTAGTTCGGAAAATGTTTCCGACAAAAACAAGCCAGAATCTTACAATTGCAATATTTGTCATAAACTTTTTGGTAATCTCTTTGAGTTGAATGACCATCAAAAATATCACAAACAGGAACAGATTGGACgatttaaatgtaattattgCGATATTAAATTTGATTCGATTGAGCATCGAGTTCGTCATACTGAACAGGTTCATATgGTATTCAAATGTCAAATTTGTAAGGATCTACTGGACACATCTGAGGGATACGTGAAGCATATTAACGAGCAACACAATGGTCGAGATCGAGAGTATACGGTGTGTGAAAACTGTGGACAACAATTTAAGTCACCAACTCAGCTAAACATTCACATGGAATCAAAATGTGGTACCCTTAAAATGTTCAAATGTGAAATATGCGATATGCGATACATGACCCAGGCTACTTTAAACGCTCATAAGATGATTCACAAAGGCGAAAAGACATTTCGTTGCCAGCACTGTGAGAAAACGTTTCTCAGTAAAGGACAACTTACTGTGCATGAACGTAAGCACACTGGggaaaaaccgtacaaatgtCAGATTTGTTCGAAAGCGTTTTCGTACCGTGAAAGTTTGGTCACTCATTCTTCAGTTCATACAGGGATCAAACCGTTCATGTGTGAATGTTGCGGGAACACGTTTTCTTGTATTGGAAATTTGCTTAAACATCGTCAGAAACGCCCACTTTCCTGTGGCTTGCCGCAGtacaacaaaactacaaaagtTGCACCAAGACCCAGcaacaaaaTTCCTGGTACATTAACAATGATGTCATTAAAACCTATTCGAGCTAAACGTGTGTTGAAAGCTGGTGAACGGAAAGTGCGTCGTAGTCGAAAAGAGGACGAATCTTCAAGAGAAACAGGCGCTGATATTGGAACACATTTGTTCCAAATAGATGAGGATGAAGAACAGTTGACGATAGCATCAACTACTATAGATGAGATTACATTTGTTGAcgaaatcaaaatgaaatacgAAAATAATCCCGCAGTAGAAAAAATAGATATGAAAGAAGCAGCTGATCTAGCTTATACCAACGACTCTGAATCgccagaaaaatttgaaatagaaaacgATCTGAGAACAAGCGAAGAAAATGTTCAAACTATGCCAAAGTATGATAATAATTACATTACTGAACCGACAACATCGTCCGATACTCCTACTGTGATAATAGAAAATGCGAAAAACCTACATGTGCATTGTGAGGATGATTTTACAGCAGAGATCGGCGATGATATCAATGAAACTGAAATGATAGAAAATGATAGTATAGACGAAACTGGAattgtatatgaaattattGTGAAGGAGGATAATATAGAAAGCAACGATGTAAACGATCCATCTAATATACAGAAATCAGAATTGGTGGAAAACTATTCCGACGATCGTACAATAAACTTTGCAGAAGATGGGCATGAAATGGAAGAAAGGATAAGCGATACTGGCGATGAGcaccaaataattattattgaaaatataaacgaAGACGGTGATGTAGATATGGCAGAAGTTATAAAAGCGATTGAGGCCAACAATGAGGAGAGTATTATAAATTCGAATAGAGAAGATTGCACCGAAAATAATGATAATGTTAATGAATGTGAAGTTTTGACAAAGGAAATCGATGAGGATGGTTGGGAAACCGACAATGATGGATTAATGTGCGGAcaagatgaggaagatgatgATTATCCTTCATCAAAAGTTGAGATTTATGAACAATCAGAGACgagaaaaactaaaaagaaacgGTTgcgaattaataaaaacattccaATTATTGAAAGAGACTATGAGTGCATCTATTGCCCAAAATTATATCATCAACGAAAACCATATGTGAAACATTTGCGATTCAACCATAACGTGAATGATTCTGAAATCGAAACGCTTTTACCGAAAAGTGAAGATACGAAAAAGTCTGAGTATCAATGTAAATACTGCGATCGTACTTATGTTAGTGCTTTAACAGTTAAAAAACACCAGTTGGACCATGGACCAGATGGTTTGCTTATTTATAAGAGTCCTTGCTGTCGGAAATATTTTGCAACCGTTGATGAGGCCACCAACCATGCACAGAACGAACATAGCGACAAGATCACCTGCAAAATTTGCAAACGGATCTATTCTGACCCAGAAAGCCTTGGTTCACATTTACGCTATGCACACAAGCAAAAAGAGGTCGACGGCGCATCGGGTGAAAATAAGACGACAAAAAAACTCAGttttgtatgtttaaaatgcGGAAAACGATGCACAACTAAAACTGCACTAACAGATCACGAGCGATCTAATTGCGGTCGCTCGCCACTTTACAAATGCGATGATTGCGGTAAACATTACCATAGTTTTGGTTCACTAAAAACGCATCGGACCGTTCACACTGGAGAACTGCCATTTCTGTGCCCGTTTTGTGGTAAAGCTTTTCGAACGCAAGGACAAGTTAAGGTACATCAGCGATCACACAGCGGGGAGAAGCCCTTCAAATGCGAGTTGTGCCCGAAATCGTTTGCCTATCGCGAAAGCCTTCTTACACATTTCTCTATTCATACGGGCATGCTAAGATTTTTATGCCAAAATTGTGGACTACGATTCTCGTGCATTTCCAATCTGCAAGCTCATCGTCGAACGAATAAAAGCACTTGTGGAGCAAAACCAAACATTACAAAATCAGTTGGAGATTTTATTGGAGTAAACCGTGGCAATATTTATATTGGAAATAAATCGAATTCAATGTAG
- Protein Sequence
- MGDQNRLSSSENVSDKNKPESYNCNICHKLFGNLFELNDHQKYHKQEQIGRFKCNYCDIKFDSIEHRVRHTEQVHMVFKCQICKDLLDTSEGYVKHINEQHNGRDREYTVCENCGQQFKSPTQLNIHMESKCGTLKMFKCEICDMRYMTQATLNAHKMIHKGEKTFRCQHCEKTFLSKGQLTVHERKHTGEKPYKCQICSKAFSYRESLVTHSSVHTGIKPFMCECCGNTFSCIGNLLKHRQKRPLSCGLPQYNKTTKVAPRPSNKIPGTLTMMSLKPIRAKRVLKAGERKVRRSRKEDESSRETGADIGTHLFQIDEDEEQLTIASTTIDEITFVDEIKMKYENNPAVEKIDMKEAADLAYTNDSESPEKFEIENDLRTSEENVQTMPKYDNNYITEPTTSSDTPTVIIENAKNLHVHCEDDFTAEIGDDINETEMIENDSIDETGIVYEIIVKEDNIESNDVNDPSNIQKSELVENYSDDRTINFAEDGHEMEERISDTGDEHQIIIIENINEDGDVDMAEVIKAIEANNEESIINSNREDCTENNDNVNECEVLTKEIDEDGWETDNDGLMCGQDEEDDDYPSSKVEIYEQSETRKTKKKRLRINKNIPIIERDYECIYCPKLYHQRKPYVKHLRFNHNVNDSEIETLLPKSEDTKKSEYQCKYCDRTYVSALTVKKHQLDHGPDGLLIYKSPCCRKYFATVDEATNHAQNEHSDKITCKICKRIYSDPESLGSHLRYAHKQKEVDGASGENKTTKKLSFVCLKCGKRCTTKTALTDHERSNCGRSPLYKCDDCGKHYHSFGSLKTHRTVHTGELPFLCPFCGKAFRTQGQVKVHQRSHSGEKPFKCELCPKSFAYRESLLTHFSIHTGMLRFLCQNCGLRFSCISNLQAHRRTNKSTCGAKPNITKSVGDFIGVNRGNIYIGNKSNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -