Basic Information

Insect: Atherix ibis
Gene Symbol: -
Assembly: GCA_958298945.2
Location: OY282607.1:46211228-46213222[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00044 0.056 14.5 0.7 1 21 30 50 30 51 0.95

2 17 0.76 97 4.3 0.5 1 23 58 81 58 81 0.95

3 17 0.00091 0.12 13.5 0.1 1 23 120 142 120 142 0.97

4 17 0.00086 0.11 13.6 0.2 3 23 150 170 148 170 0.97

5 17 8.4e-05 0.011 16.8 0.2 1 23 176 199 176 199 0.98

6 17 0.015 1.9 9.7 1.7 1 23 270 293 270 293 0.91

7 17 0.068 8.7 7.6 0.3 3 23 328 349 327 349 0.89

8 17 0.00099 0.13 13.4 0.8 1 23 355 377 355 377 0.97

9 17 3.6e-05 0.0046 17.9 3.7 2 23 383 404 382 404 0.97

10 17 5.8e-05 0.0074 17.3 1.4 1 23 410 432 410 432 0.97

11 17 0.00024 0.03 15.4 8.4 1 23 438 460 438 460 0.98

12 17 1.8e-05 0.0022 18.9 2.7 1 23 466 488 466 488 0.98

13 17 1.3e-08 1.7e-06 28.8 2.1 1 23 494 516 494 516 0.99

14 17 9.2e-05 0.012 16.7 0.5 1 23 522 544 522 544 0.97

15 17 8.1e-06 0.001 20.0 7.5 1 23 550 572 550 572 0.98

16 17 1.4e-06 0.00018 22.4 7.0 1 23 578 600 578 600 0.97

17 17 7e-08 8.9e-06 26.5 0.5 1 23 606 628 606 628 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00044	0.056	14.5	0.7	1	21	30	50	30	51	0.95
2	17	0.76	97	4.3	0.5	1	23	58	81	58	81	0.95
3	17	0.00091	0.12	13.5	0.1	1	23	120	142	120	142	0.97
4	17	0.00086	0.11	13.6	0.2	3	23	150	170	148	170	0.97
5	17	8.4e-05	0.011	16.8	0.2	1	23	176	199	176	199	0.98
6	17	0.015	1.9	9.7	1.7	1	23	270	293	270	293	0.91
7	17	0.068	8.7	7.6	0.3	3	23	328	349	327	349	0.89
8	17	0.00099	0.13	13.4	0.8	1	23	355	377	355	377	0.97
9	17	3.6e-05	0.0046	17.9	3.7	2	23	383	404	382	404	0.97
10	17	5.8e-05	0.0074	17.3	1.4	1	23	410	432	410	432	0.97
11	17	0.00024	0.03	15.4	8.4	1	23	438	460	438	460	0.98
12	17	1.8e-05	0.0022	18.9	2.7	1	23	466	488	466	488	0.98
13	17	1.3e-08	1.7e-06	28.8	2.1	1	23	494	516	494	516	0.99
14	17	9.2e-05	0.012	16.7	0.5	1	23	522	544	522	544	0.97
15	17	8.1e-06	0.001	20.0	7.5	1	23	550	572	550	572	0.98
16	17	1.4e-06	0.00018	22.4	7.0	1	23	578	600	578	600	0.97
17	17	7e-08	8.9e-06	26.5	0.5	1	23	606	628	606	628	0.99

Sequence Information

Coding Sequence: ATGAAATATGATAGTTGTTCGGAAATCCAAATCGACAACAATGCTTCAACGCAAAATGTTAACGAAGAAGATTTATCAGAACATCATTTCGAATGTAGTTtatgcagtaaaaaatttaaaaatattcaaaatttcgaggTACACGTTCGCAACGAGTTGAGAGAACCAACGTTTGTTTGCAATATTTGCTTTGGAAACTTTCAAATATTCGAAGAATATAGCATACATGTTCGAACTAAACATGATTTATCGGATACAACACTTCCAATGTTTACATGTAGATTTTGTGAGCGGTCAGAATCCGAAGCAACAGTGTTCATAGAGCATGAAGCCACTCATTTCAGAACGTGTCTTCCATTTGATTGTGTAAACTGTGGACAAGCATTTGTATCTGCTTTACAATTAAATGGTCACCGAAGGCTTCATTGCGGAGAACGTCCGTATGGTTGTGATTTGTGTGAGAAAAAGTTTGCTCGAACAGAAGATGTTTACGTCCACATCCGGAGTCACAATAATCTTCCCGTATACGAGTGTCCAATGTGCAGTAAACTATTTGCAACACCTAAAAATTTTGGtcttcacataaaaaaaattcaccaaaccGAAATTGAACCAGAAAAACTTGCACTCATAGAAGTTGGGCTCGAGCAAAATGATTACAGTTTTGTCAACGTTATTAGTACTCTAGAATCTCCAAAAAATATTACCGAGTATGGACGGCaagaaaaaactcaaaataaacggaAGAATATAGAATACAATATTCAGACAAAGTATTTATTAGAGAAGTATAATTTGATTAAACGTTTCGAATGTTTCTTATGCGATTTATCATTTATTAAGGCGAAAACTTTGGAAATTCACTGCAAGAGGATTCACTATGGTCTCTATACGATAGAACAGCTTACAAAAGTAATtcgcaaaattaataataatagagtcGATGATTATTCTGGGGAAAAACATAATCTAAATAGAAAATGTATACTGTGCCGTATGAGTTTTCCAAATGAAAATGAACTACGATCACACTTACTTAATGAGCATGATGGTTGGCGTCCGTACAAGTGCATTAAatgtaaaatcaattttacaaGACCATCGACACTATTGGATCATGTAAAATTGCACGATGAGCGGCGTGTCAAATGTTCATATTGTAAGAAAGAATTTGTGAATCATTATTCCCTTGAAGCCCATATTAAGCACCACGAAGGCAGCTCAGTGCATAATTGCAGTATTTGCCAAATTCCATATACGAGTACAAATGCACTGAAAAGGCATATGCGCTTACATTCTGAAGGCAGACCACACAAATGTAGTTTTTGTGAGAAAAGATTTGTCCACTCATGTGATttgcaaaaacatttgcgaatcCACACAGGCGAGAAACCGTATAAGTGTGACGATTGCGGAAAACTATTCGCACATTTAACAAGTTATCGGAAACACCAAATGCTGCACACAAATATGAAGGAATTTCAATGCACTGTCTGTGGCAAAGCTTTTAATCATAAGAGCAATTTGATCGTTCATACCCGAACACATACGGGCGAACGCCCATTTGCTTGCGATATTTGCATTAAAACATTCTACACGTCAGGCCATTTGGCCGACCATATCAAAATTCACACGGGGGCAAAAGATTATAACTGCACAATTtgtggtaaaaaattttgccatAAGAGCAGTTATGAAAAACACAAAAGGGTACACTCTGGTGAACGGCCTCATCATTGTAACGTTTGTGAAAAACGTTTCTCTCAAAACAGTCATCTAAAAGTTCACATGAGGATTCATACTGACGAGAAACCTTTTAAATGCGAAGTTTGTGGAAAAGCATTCCGGCGATCTGATGCTGTGAAAAGTCATTTAAGAACGCACACATCTAAAACAGACCGATTGGTAAAATCAACTTCTCACAATAGTActgaaattacttttaatatgtGTAAACCTCttaatgaagaagaaaatataaaattatattcataa
Protein Sequence: MKYDSCSEIQIDNNASTQNVNEEDLSEHHFECSLCSKKFKNIQNFEVHVRNELREPTFVCNICFGNFQIFEEYSIHVRTKHDLSDTTLPMFTCRFCERSESEATVFIEHEATHFRTCLPFDCVNCGQAFVSALQLNGHRRLHCGERPYGCDLCEKKFARTEDVYVHIRSHNNLPVYECPMCSKLFATPKNFGLHIKKIHQTEIEPEKLALIEVGLEQNDYSFVNVISTLESPKNITEYGRQEKTQNKRKNIEYNIQTKYLLEKYNLIKRFECFLCDLSFIKAKTLEIHCKRIHYGLYTIEQLTKVIRKINNNRVDDYSGEKHNLNRKCILCRMSFPNENELRSHLLNEHDGWRPYKCIKCKINFTRPSTLLDHVKLHDERRVKCSYCKKEFVNHYSLEAHIKHHEGSSVHNCSICQIPYTSTNALKRHMRLHSEGRPHKCSFCEKRFVHSCDLQKHLRIHTGEKPYKCDDCGKLFAHLTSYRKHQMLHTNMKEFQCTVCGKAFNHKSNLIVHTRTHTGERPFACDICIKTFYTSGHLADHIKIHTGAKDYNCTICGKKFCHKSSYEKHKRVHSGERPHHCNVCEKRFSQNSHLKVHMRIHTDEKPFKCEVCGKAFRRSDAVKSHLRTHTSKTDRLVKSTSHNSTEITFNMCKPLNEEENIKLYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -