Basic Information

Insect: Atherix ibis
Gene Symbol: -
Assembly: GCA_958298945.2
Location: OY282609.1:38324716-38330157[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.1e-05 0.0039 18.2 2.9 1 23 435 457 435 457 0.98

2 18 1e-05 0.0013 19.7 0.4 1 23 463 485 463 485 0.97

3 18 5.7e-05 0.0072 17.3 1.7 1 23 491 513 491 513 0.98

4 18 1.7e-05 0.0021 19.0 3.1 1 23 519 541 519 541 0.97

5 18 0.00019 0.025 15.7 4.9 1 23 547 569 547 569 0.98

6 18 6.9e-05 0.0088 17.1 5.7 1 23 575 597 575 597 0.97

7 18 3.3e-07 4.2e-05 24.4 4.3 1 23 603 625 603 625 0.98

8 18 1.2e-07 1.6e-05 25.7 2.4 1 23 631 653 631 653 0.97

9 18 0.00016 0.021 15.9 5.7 1 23 659 681 659 681 0.97

10 18 6.5e-05 0.0083 17.2 6.4 1 23 687 709 687 709 0.98

11 18 1.7e-05 0.0022 18.9 4.7 1 23 715 737 715 737 0.98

12 18 8e-06 0.001 20.0 8.1 1 23 743 765 743 765 0.98

13 18 6.5e-06 0.00083 20.3 7.6 1 23 771 793 771 793 0.97

14 18 7.3e-07 9.3e-05 23.3 7.7 1 23 799 821 799 821 0.98

15 18 0.00023 0.029 15.4 9.5 1 23 827 850 827 850 0.95

16 18 0.00019 0.024 15.7 0.5 1 23 856 878 856 878 0.97

17 18 0.00083 0.11 13.7 4.3 1 23 888 910 888 910 0.99

18 18 7.4e-06 0.00095 20.1 2.5 1 23 916 939 916 939 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.1e-05	0.0039	18.2	2.9	1	23	435	457	435	457	0.98
2	18	1e-05	0.0013	19.7	0.4	1	23	463	485	463	485	0.97
3	18	5.7e-05	0.0072	17.3	1.7	1	23	491	513	491	513	0.98
4	18	1.7e-05	0.0021	19.0	3.1	1	23	519	541	519	541	0.97
5	18	0.00019	0.025	15.7	4.9	1	23	547	569	547	569	0.98
6	18	6.9e-05	0.0088	17.1	5.7	1	23	575	597	575	597	0.97
7	18	3.3e-07	4.2e-05	24.4	4.3	1	23	603	625	603	625	0.98
8	18	1.2e-07	1.6e-05	25.7	2.4	1	23	631	653	631	653	0.97
9	18	0.00016	0.021	15.9	5.7	1	23	659	681	659	681	0.97
10	18	6.5e-05	0.0083	17.2	6.4	1	23	687	709	687	709	0.98
11	18	1.7e-05	0.0022	18.9	4.7	1	23	715	737	715	737	0.98
12	18	8e-06	0.001	20.0	8.1	1	23	743	765	743	765	0.98
13	18	6.5e-06	0.00083	20.3	7.6	1	23	771	793	771	793	0.97
14	18	7.3e-07	9.3e-05	23.3	7.7	1	23	799	821	799	821	0.98
15	18	0.00023	0.029	15.4	9.5	1	23	827	850	827	850	0.95
16	18	0.00019	0.024	15.7	0.5	1	23	856	878	856	878	0.97
17	18	0.00083	0.11	13.7	4.3	1	23	888	910	888	910	0.99
18	18	7.4e-06	0.00095	20.1	2.5	1	23	916	939	916	939	0.96

Sequence Information

Coding Sequence: atgaatccAGAACGTTCAGTTCAGAGTTCAGAAGGTAACAATTCTAATGATCAACAGAGGCAACAGTCTCAGCAGTCGTCACCACAACAATCACCGCACCATCAACAGCAGCATCATCACCTGCATCATCGTCTGTCCCATCAACAGCAAATCGATGAGCATCATCAGCAGAATCGTAGCTCTGTTGGAGTAATACAGCCAGTTAGTGAAGCTGAAGGAAAACACCCTTTGCAATTATCAGGAGTTCCACACCTTGGAAAATACTGGGTTGTCACGAATCTCTTCCAGGGTGCCGGGCACAATGCTTATAATATAGCTACTCCGCCGACATCATCATCAGGATTAGTAATGGCACCGCCTCCGCTACCTTCAACACATTCGACGACACCAATATTGAAATTGGATACGATCAAACAAGAATCACCAAATATTCATCATCGTCACACACctcaacaccaacaacaacagcaacaaacaacaCAGTCGCAACAACAAACAGTACCACAGCAACATCTAGTAACACCAGTTAGTGTTGGGTCAACCTTAATCCACATACCGAATCCACTAATGAATCCAGTGGCTGGACAGAACCAAATTCCTAATAATAGCATGATATCAAATGGTCCGCCACCGGAACAGATACAAATTCCTGTTAATCCGGAGTCAAGTCTTATGGTGATCGATACTTCTAATTCAAATCCTAAACAGGAAAAGATGACAttaaattcacaaaatattCGTCAAGAACCTATGCAAACTACTATGGATAGATCTGTAACAGGTCACCCACTGCAAGAAGTTAAAGAAGAAAAGCCATTtgcaaattgtaaaattataccTCCTCATCAACAAATTCATCCACATCATCTAATAAATGATTCAAAAGTGCAAGTTCCCCATTTATTAGATATGCGCCATGCTGATGGATCACTGGTTAAAATACAACCACCTGAACAGGAGTTAGGAAAATCATTGGGTGTTGAAATGTATAAAGTTAACATTGAAGATTTAAGTCAATTCTTATCATATCATGAAGTTTTTGGAAAACTACACGGCGATGTTATGACACCACATCCAATAACGCATGCAAATACGCATACAACAAATACTGTTACTAATGCTAATATACCATCATCAACATCATCCAATACTACAACAACtactaataatattacaaatacaACTGGCGAATTGTTAATGCCGAAAATTGAAGGAGTTAATCAAATGCCAAGTATTAATCAAACGCATAATCCGAACAATACACATTTACTAGCTGATGGTACAACGATAACACCAGCTACACACACTTGCGATATTTGTGGAAAAATGTTTCAATTCCGTTATCAGTTGATAGTTCATCGTAGATATCACAGTGAACGTAAACCATTTAACTGTCAAGTTTGTGGACAAGGTTTTACTACATCGCAAGACCTAACACGTCATGGTAAAATACACATCGGTGGGCCAATGTTTACTTGCACTGTCTGTTTCCACGTGTTTGCCAATGACGCAAGTCTCGAGAGACATATGAAAAGACACTCAACTGACAAACCATTTGCATGTACGATTTGCCAAAAAACATTTGCACGAAAAGAGCATCTTGATAATCATTTCCGGAGTCACACTGGTGAAACACCCTTTCGATGCCAGTTTTGCGCTAAAACATTTACTCGAAAGGAACATATGGTTAATCATGTACGCAAACATACTGGCGAAACTCCACATCGTTGTGATATCTGCAAAAAATCTTTTACGCGCAAAGAACATTATGTTAATCACTATATGTGGCATACagGTGAAACACCACATCAGTGTGAAGTTTGTGGCAAAAAATATACACGAAAGGAGCATCTGGCAAATCATATGCGATCACATACTAATGATACGCCATTCAGGTGTGAGATATGTGGTAAAAGTTTCAGTCGAAAAGAGCATTTCACCAATCATATTTTGTGGCATACcggCGAAACTCCTCATCGCTGTGACTTTTGTGCTAAGACGTTTACTAGAAAGGAACATCTTTTAAATCATGTACGCCAACATACGGGCGAATCACCACATCGTTGTACGTATTGTTTGAAGACGTTCACTCGGAAAGAGCATTTAGTAAATCATGTTCGGCAGCACACTGGTGAAACGCCATTTAAGTGCACATTTTGCACAAAAGCTTTCACACGGAAAGATCATATGGTAAATCATATACGGCAGCATACTGGCGAATCTCCGCACAAATGCACGTACTGCACAAAAACGTTTACTAGGAAAGAACATCTCACTAATCATGTACGACAACATACAGGTGAATCACCGCATCGATGCTCGTATTGCAAAAAAACGTTTACCAGAAAAGAGCATCTTACAAATCATGTGCGTTTACATACAGGTGATTCTCCTCATAAATGTGAATATTGCCAGAAAACTTTTACGCGTAAAGAGCATTTGAATAATCATATGCGTCAACATTCAAGCGACAATCCTCATTGTTGCAATGTTTGTAATAAACCATTTACGAGAAAAGAACATTTAATAAATCATATGTCTCGCTGTCATACTGGAGATAGACCATTTGCATGTGAAACGTGTGGCAAATCCTTCCCTTTGAAAGGCAATTTACTTTTCCATCAAAGAAGTCATACTAAGGGGCAAGATGTAGAACGACCTTTTCGTTGCGATAAATGTCCGAAAGATTTCATAtgcaaagGTCACCTTGTGTCACATATGAGATCACATTCAGGCGAAAAGCCGCATATGTGCACGCTCTGCAGTAAATCATTTGTTGAAAAAGGGAATCTGAAAAGGCATATTAAAATGAATCATCCGAATGTCATACTACCACCAACTGTAATGGCAACTACAGTGAAAAATGAATCGAATATAACAATTCTGCATCAACCTCCAACTTTACATACAATACAGCAAATTACTGGAACTCCAAATGCCACAGCAAATGTAAACAATGCAACTGCTGTCTCAAATCCTATTTCTATTGGTTTAATGCCTGTTGCATCTTCAACAATAACATCGCTTAATGGTCAAACACAAccacaacagcagcagcaacaacagcaacaacgacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacagcaacagcagcaacaacaacaaccgcaacaacaacaacaacatcagcaacaacaacaaccacaacaacaacaaccacaacaacaacaaccacaacaacaacaacatcagcaacaacagTCGCAACCgacacagcaacaacaaaatcagCCACAAGTTCAGCAGCAACAAACACAATCACAGCAACATGTACAGAATCAATTGCATCAAGGAACAGCAACATCACATCatcaacaaaataattcaaCGCAAGATCAAAATGCACAGCAATCAGTTCCGATTGCAATTATACAAACCTCTGATCCGTCTGCAATAGCGAGAGCATCTATTCAATTGCAACATTTGCCGGCAAATGTAGAGCAACATTCTGTAGTATATTAA
Protein Sequence: MNPERSVQSSEGNNSNDQQRQQSQQSSPQQSPHHQQQHHHLHHRLSHQQQIDEHHQQNRSSVGVIQPVSEAEGKHPLQLSGVPHLGKYWVVTNLFQGAGHNAYNIATPPTSSSGLVMAPPPLPSTHSTTPILKLDTIKQESPNIHHRHTPQHQQQQQQTTQSQQQTVPQQHLVTPVSVGSTLIHIPNPLMNPVAGQNQIPNNSMISNGPPPEQIQIPVNPESSLMVIDTSNSNPKQEKMTLNSQNIRQEPMQTTMDRSVTGHPLQEVKEEKPFANCKIIPPHQQIHPHHLINDSKVQVPHLLDMRHADGSLVKIQPPEQELGKSLGVEMYKVNIEDLSQFLSYHEVFGKLHGDVMTPHPITHANTHTTNTVTNANIPSSTSSNTTTTTNNITNTTGELLMPKIEGVNQMPSINQTHNPNNTHLLADGTTITPATHTCDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCTVCFHVFANDASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGETPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHVRQHTGETPFKCTFCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQDVERPFRCDKCPKDFICKGHLVSHMRSHSGEKPHMCTLCSKSFVEKGNLKRHIKMNHPNVILPPTVMATTVKNESNITILHQPPTLHTIQQITGTPNATANVNNATAVSNPISIGLMPVASSTITSLNGQTQPQQQQQQQQQRQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQQQQHQQQQQPQQQQPQQQQPQQQQHQQQQSQPTQQQQNQPQVQQQQTQSQQHVQNQLHQGTATSHHQQNNSTQDQNAQQSVPIAIIQTSDPSAIARASIQLQHLPANVEQHSVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -