Basic Information

Insect: Atherix ibis
Gene Symbol: -
Assembly: GCA_958298945.2
Location: OY282607.1:39799008-39807504[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 8.2e-11 2.1e-07 31.2 0.0 1 38 555 593 555 598 0.90

2 5 2.2e-13 5.6e-10 39.4 0.1 2 39 610 647 609 650 0.94

3 5 8.5e-19 2.2e-15 56.7 0.0 1 45 664 709 664 709 0.98

4 5 0.1 2.6e+02 2.0 0.2 1 13 716 728 716 729 0.89

5 5 0.044 1.1e+02 3.2 0.0 29 44 726 742 725 742 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	8.2e-11	2.1e-07	31.2	0.0	1	38	555	593	555	598	0.90
2	5	2.2e-13	5.6e-10	39.4	0.1	2	39	610	647	609	650	0.94
3	5	8.5e-19	2.2e-15	56.7	0.0	1	45	664	709	664	709	0.98
4	5	0.1	2.6e+02	2.0	0.2	1	13	716	728	716	729	0.89
5	5	0.044	1.1e+02	3.2	0.0	29	44	726	742	725	742	0.86

Sequence Information

Coding Sequence: ATGTATTTGGTTACAAGTGAATCCTTAATTTTGGTTGAAgGACTCTTACGAACGGctgaacaattaaaaattaaaggtcTATGCGAGACAGCAGAGCCAGCCGTCGAAACGGCCAACGACAATACGACACCGTCGACAATAGTAGTGCCAGATTCATTGGCACCGCCACCGCCTCCAGGAACAGCGAATATAACGACAAGCCGGAATATAAATCCTTTAAACAATTTGGTTGGTAATGTATCACAGCGAAAGTCACGCGTAAGGAAACGTTCAAAATCGCCTGATTCGAATCAGCAACTTAGCcatcagcagcaacagcaacagcaacatttGGCATACCAGCAGCAGCAATCATCGATAGTTGGTAATACTGCAAATCAATCGTATACGACATCAGCCATAGTCACCTTGAATACTTCGATAGGAGCCATAACGTCATCGAATACTGTACCTGGTGGTGGAACGAccccaacaacagcaacagtagCCCTACCGTCAACATTACCGGcgacaaatattaaaatagaaaataacgaTTCGCAACAGCAGCTGCAACAGCAACAGcttcagcagcaacaacagcaacaacaacaacaacaccaccaattgcaacagcaacaacaacagttgAATCAACACAATTCAAATCCAAatcaattacaacaacaacaacaacagcaacagcaaaatTTACATTCACAAGAAAATTCCCAacaacatcagcagcagcagcaacaacagtcGGAACAGCAGCTAGACCAGCAACAAATAGCAATAAAAGTCGACAGTAGCACGTCGTCGGGAACAAACGATCAATCGGGTGGTGGTGGACCGAAACCGGCGAAAATTTGCAAAACCGAAGATACAACAAATAATGGAAGCGGGGTTGTTGCCCCTGGCACGGCTATTGTAACACAAATTGTAGTGGCGCGGGACAGCAAAGACAAGACAATGACTAGCCTAGGAATGGGAATGaatgGCGGGCTTTTGGGTGTACCAATGGGATTTTTAGACTTTGCCCCAGAACCGCCAGCCCCATCAGCAACACCAGTTACAGAACATGTTGACATGTCATGTACACCAAGTAGTGATACAAGAGATTTATCAAATCCCACCGAAGCGCTCGATATAGACAATCAGATAGCACAGCATATAATCCATCGTCTAGATCCGAATCCAATGCATCATATGTCATCGCATCAGCATCATCATCCGCATCATCAGGGTCAAGGCCATCAACAGCATCCACACCATCAGGGCCAACATCAGACATCGTCGTCAGACGAGAACAGTTCAGGGTTAATACAGAATATCAAAAGTGAAGTGGTCGATGTTAAACATCACATCCATCAGcatcagcaacagcaacagcaacagatGCAGGGTCAGCGTCAAGGTCAGAGACAACAGCAATCCCACCATCAGGACATATCATCGACGACCGTTATGGAAATCGATCCGAATAATATAAAACATGAGCCCGGAATGATAATAACACCAGAAATAGTGACTATGATGACCACCGGACATATGGACATTTACAATTCGGATACGAGCGAGGATTCGTTGATGATAGCGAACGGATCGCCAAACGATAACAGCGAGCCACACTATACGAATCTGGACCAACCGCACGATTCGAAAGTCGGACCGAAGACATGGACTCAAGAGGATATGAACTCCGCGTTGGACGCGCTCAAGAACCATAACATGAGTCTGACGAAGGCGTCTGTTACGTACGGCATACCATCGACGACGTTATGGCAGCGTGCTCATCGTATGGGCATCGATACTCCGAAAAAGGAGGGCACGACCAAATCGTGGAACGAGGAGGCATTGAACAGTGCCCTCGATGCCCTGCGCACTGGACAAATCTCAGCTAATAAAGCATCGAAAGCGTACGGAATTCCCTCCTCGACTCTGTATAAAATTGCCCGACGCGAAGGTATACGATTGGCTGCACCGTTCAATGCAGCGCCCACAACATGGACACCTGAGGATCTCGAACGAGCACTCGAAGCTATTCGGGCTGGACAAACTTCCGTCCAAAAAGCCAGCACCGAATTCGGAATACCAACAGGGACACTTTATGGTCGCTGTAAACGTGAAGGCATTGAATTGTCACGTTCCAATCCGACACCGTGGTCTGAGGATGCTATGAACGAAGCCTTAGTAGCAGTAAGTTCGTTGTACGGTCGGTTCAAACGCGGCAAATACGATACTAGTGGCAGTGCGAACGTGACTGCTGGCAGTGCGAATATCAGCGGAATCGAGATGATCGATCACAGTCCAGAGAATTCGGTACACCACTTTCAGCAATTCCAGTATAGGCACAGTCCAGGACCGTCTAATGCGCAGGCAAACTCGCAAGtccaacagcagcagcagcaacaacagcagcaacaacaacaacagcaacagcagcagcagcaacaacaacaaccacagcaacaacaacagcaacaacagcgtCAACAACAACCACCaccgcagcagcagcagcaacttCATTCTCAACAACATCATCCTCAGCAACCTCAACAAGCCCAGCAACAGTCGCATCCACATCAACACCAGCAGCCGCAACCGCCACCTCCtcagcaacatcaccaacaccatCAACAGCCACACCAACTTCATctacaacagcagcaacatcatcCACAGCAACAACACCATCAACAACAACCACCaccacagcaacagcagcagcaaccaccaccaccaccccAAACAGCACAGCATCTACAACAGCCTCAACCACAAGATGTCGTCACAACCAGCCACCAAGTCCACAATCAGGCTGGCCAAATTCAGCAAATCTACCATCAACACCACAACACTCCAGAACGTAGTTGA
Protein Sequence: MYLVTSESLILVEGLLRTAEQLKIKGLCETAEPAVETANDNTTPSTIVVPDSLAPPPPPGTANITTSRNINPLNNLVGNVSQRKSRVRKRSKSPDSNQQLSHQQQQQQQHLAYQQQQSSIVGNTANQSYTTSAIVTLNTSIGAITSSNTVPGGGTTPTTATVALPSTLPATNIKIENNDSQQQLQQQQLQQQQQQQQQQHHQLQQQQQQLNQHNSNPNQLQQQQQQQQQNLHSQENSQQHQQQQQQQSEQQLDQQQIAIKVDSSTSSGTNDQSGGGGPKPAKICKTEDTTNNGSGVVAPGTAIVTQIVVARDSKDKTMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTEHVDMSCTPSSDTRDLSNPTEALDIDNQIAQHIIHRLDPNPMHHMSSHQHHHPHHQGQGHQQHPHHQGQHQTSSSDENSSGLIQNIKSEVVDVKHHIHQHQQQQQQQMQGQRQGQRQQQSHHQDISSTTVMEIDPNNIKHEPGMIITPEIVTMMTTGHMDIYNSDTSEDSLMIANGSPNDNSEPHYTNLDQPHDSKVGPKTWTQEDMNSALDALKNHNMSLTKASVTYGIPSTTLWQRAHRMGIDTPKKEGTTKSWNEEALNSALDALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVSSLYGRFKRGKYDTSGSANVTAGSANISGIEMIDHSPENSVHHFQQFQYRHSPGPSNAQANSQVQQQQQQQQQQQQQQQQQQQQQQQPQQQQQQQQRQQQPPPQQQQQLHSQQHHPQQPQQAQQQSHPHQHQQPQPPPPQQHHQHHQQPHQLHLQQQQHHPQQQHHQQQPPPQQQQQQPPPPPQTAQHLQQPQPQDVVTTSHQVHNQAGQIQQIYHQHHNTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -