Basic Information

Insect: Athalia rosae
Gene Symbol: -
Assembly: GCA_000344095.2
Location: NW:1347173-1351335[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.013 0.84 9.5 0.6 1 23 336 358 336 358 0.96

2 8 0.00069 0.045 13.5 1.8 2 23 370 392 369 392 0.96

3 8 1.4e-05 0.00091 18.8 0.2 2 23 432 453 431 453 0.97

4 8 8e-06 0.00053 19.6 1.9 3 23 461 481 459 481 0.95

5 8 2.2e-06 0.00015 21.3 1.1 1 23 489 511 489 511 0.99

6 8 3e-05 0.002 17.8 1.8 1 23 543 565 543 565 0.99

7 8 0.012 0.81 9.6 1.7 2 23 576 598 575 598 0.94

8 8 1.5 97 3.0 0.2 1 13 609 621 609 628 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.013	0.84	9.5	0.6	1	23	336	358	336	358	0.96
2	8	0.00069	0.045	13.5	1.8	2	23	370	392	369	392	0.96
3	8	1.4e-05	0.00091	18.8	0.2	2	23	432	453	431	453	0.97
4	8	8e-06	0.00053	19.6	1.9	3	23	461	481	459	481	0.95
5	8	2.2e-06	0.00015	21.3	1.1	1	23	489	511	489	511	0.99
6	8	3e-05	0.002	17.8	1.8	1	23	543	565	543	565	0.99
7	8	0.012	0.81	9.6	1.7	2	23	576	598	575	598	0.94
8	8	1.5	97	3.0	0.2	1	13	609	621	609	628	0.86

Sequence Information

Coding Sequence: ATGGTGAAGTTATCAGATTTCTCCAAATCTTGCCGACTTTGTTCAAGAGTCTatcgggttgaaaaattggtaaaagTATTCAGTAATAGAGGAATATCTCTACGCCTTAAAGATAGTGTCAATGCACACCTACCAATAAAGGTGATTGAAACAGACACAATGCCACGAAACATCTGCATCAATTGCATCAGGAGGCTAAATACTACTAATGAGTTTTTTGACACAGTTCTAGCTGCTGATAAACTCTTCAAGAGATTGCTTCAAAAGAAAGAACAGGAATATGTGGACCAGCTTGACAAAAAGCAACAATCAAAGcactattttcaaaatgaaaaaaccgagGCACACACACGTCTTTCACAATCACAAGTAAAATCTTTGACGAATACTGATAATCGAATGGCATCTCTTGTTAATTATCATGTTGGAGTATCTAAAGCTTTAGCCGAATCTAAACTTGATTCGAATAGAACTAAAATCGAGATTCCTGCAGACAAAAATGCCAACGAAGGTAAATACCTCAGCGCTATTTCTAAGTCCAATCATGTAGTATTGGGGGCTGGAAACTGTAGAGGAAATATCGTAATCAAGGTTACAAATAATGCTGCCTATACTCCTAAAGATCAGTGTACAAAACTTCCGATAGAAGTGCTGTGCTGCCCTGATTGTAAAGAGacggcaaaaattttttcaaccgaagaAAGGCAGttattctttgaatatttgaaacaacATTGTTGCAATCAAACAGTTGACACTGGTGAGGTGGTCAAATCATTTGTCAAGTACAAGGAAATCTTTGGGAGTGGAGTCATTGTAGATCCAAAATTAAAGGCTTTGGTAACTAATGACCCCCCAAAACTAACATCTAGTAGAGTTTGGCCAGAAGGTGATTTACCAGCTGATCCTGGCCCCAGTCCTACAACTCACGAGAACATATTCGAAGATGAAGTAAGATTGGATGATGATTTTCATTGGCCAATGCCCAAACGCATCAGAAAACTGCACGCTTGTACTGTTTGTGACTTTATGGCAAAAAGTGCAATGGGGCTGAAAGCCCATAAAAAAATGCATAGAACTGATAAGAAACAAATATCACAGACAGTTAAATGTCAACattgcaatgaaaaatttgagacaaTCACAGAAGTTAGAAAGCATCAACGTCTGGCACATGTTACTTTTGGAGCAAAAAACTCATTGTGCGAATATTGCGGTGTATTGAAGGCACAGAAAGCTTTGAGGGATCATGTCCTGAAACAACACACTGTGGAGAGCGAAATAGAAAAGCAGGAATGTGATGTTTGCGGAaaatcctTTATTTCACCGACAAGCTTATACCTGCATAAGAAAATTCACACATTAGGTGAAAAACACCTCTGCGATTTATGTGGAAAATCTTTCAAACAAAGAATTGCACTGCGGCGTCACTACATGCTGCATTTTCCACGTGCTCCGCCAAAATTCAAATGTAATATATGCGAGAAAAGAGTTACTACCAGAGGCTCACTTCGTCTGCACATGATGAGACATACTGGTGAAAAACCGCAAGAGTGTCCAGAATGTCACTTAGTAATGAGGCATGGGTTGAAACATCATATGAGATTACATTCCGATGAAGCACCATTTAAGTGTGTGGTATGCAGTGCTGATTTCAAGCGTCGGGATTATGTTCGTCGTCACATGAGAAAACATTTGAACGAAACAACAGAGCTTCAAACATTACAGTGTACGATTTGCGATCACCAATTCGATGATATCAAGGATTTTCTAATTCATCATCGAGATATACACGGCAACGAAATATTTACTCAAATCAAGATATATGAATGTAAAACATGTTCCATGCAGTTTGCCGACGCTCTACAACACAAAGATCATGAAGACACGTGTAAAACTGTAGAATGGGAACCTCTTAAATCTCATAATACCGAACCACAGTCCTGTATCATGGTTAGCGGTGCCAAAGTTGACGATGTAAGGGATCACAGAAACTGCCCACGAAGTAGTGGGTTAGATGGGTCCGACCTTTGTTCTCACTGTCATGATAAAGAACCAAGTCAAAATAGTCTTGTGGTACACAGAAGAAGAGAACCATCGAGACAGTCTTTCATCAATGCCCTTGATGATCAAAGATTTCCCAGTCAAATAGAGCGTATTGCATATCACCAAAATCGTTACAAATTTAATGATTCTGACAGATTAAAAAGAACGGACGAAGGAAACCCACAGCTTCACCCCTCCGTTCATGTTATTTTGCCAGAGGAAGTCATGTGTCTAGGTGCTAACCCGTCCGagtattcgtataatatagaaaaaccAAGCCTCCGAGTAAAAGGAATACCGCTCATGGTGGATGAACAAATAACTAACAACAGTATTGCCGTTTTTGAAAGTCCAGTTGAACAGTTCAGTCAAACTTCACATTCCCAATCACAGCTTAGAATGCATCAAAGTACTGATGGTTACGTTAGGGATTCCCTTACTTGGAAACAACACTAG
Protein Sequence: MVKLSDFSKSCRLCSRVYRVEKLVKVFSNRGISLRLKDSVNAHLPIKVIETDTMPRNICINCIRRLNTTNEFFDTVLAADKLFKRLLQKKEQEYVDQLDKKQQSKHYFQNEKTEAHTRLSQSQVKSLTNTDNRMASLVNYHVGVSKALAESKLDSNRTKIEIPADKNANEGKYLSAISKSNHVVLGAGNCRGNIVIKVTNNAAYTPKDQCTKLPIEVLCCPDCKETAKIFSTEERQLFFEYLKQHCCNQTVDTGEVVKSFVKYKEIFGSGVIVDPKLKALVTNDPPKLTSSRVWPEGDLPADPGPSPTTHENIFEDEVRLDDDFHWPMPKRIRKLHACTVCDFMAKSAMGLKAHKKMHRTDKKQISQTVKCQHCNEKFETITEVRKHQRLAHVTFGAKNSLCEYCGVLKAQKALRDHVLKQHTVESEIEKQECDVCGKSFISPTSLYLHKKIHTLGEKHLCDLCGKSFKQRIALRRHYMLHFPRAPPKFKCNICEKRVTTRGSLRLHMMRHTGEKPQECPECHLVMRHGLKHHMRLHSDEAPFKCVVCSADFKRRDYVRRHMRKHLNETTELQTLQCTICDHQFDDIKDFLIHHRDIHGNEIFTQIKIYECKTCSMQFADALQHKDHEDTCKTVEWEPLKSHNTEPQSCIMVSGAKVDDVRDHRNCPRSSGLDGSDLCSHCHDKEPSQNSLVVHRRREPSRQSFINALDDQRFPSQIERIAYHQNRYKFNDSDRLKRTDEGNPQLHPSVHVILPEEVMCLGANPSEYSYNIEKPSLRVKGIPLMVDEQITNNSIAVFESPVEQFSQTSHSQSQLRMHQSTDGYVRDSLTWKQH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00174606; iTF_00175360;
90% Identity: -
80% Identity: -