Aros000270.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Athalia rosae
Gene Symbol
-
Assembly
GCA_000344095.2
Location
NW:1673019-1676780[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0045 0.3 10.9 0.7 1 23 118 141 118 141 0.97
2 13 0.0073 0.48 10.3 4.6 2 23 274 296 274 296 0.91
3 13 2.8e-05 0.0018 17.9 1.6 3 23 353 374 352 374 0.97
4 13 4.1 2.7e+02 1.6 7.6 3 23 462 483 461 483 0.95
5 13 0.82 54 3.8 1.0 1 23 534 557 534 557 0.95
6 13 0.00018 0.012 15.3 0.4 2 23 606 628 606 628 0.95
7 13 0.0051 0.34 10.7 0.4 2 23 655 677 654 677 0.92
8 13 0.0054 0.35 10.7 3.6 2 23 729 751 728 751 0.96
9 13 0.073 4.8 7.1 4.2 3 23 766 787 764 787 0.92
10 13 5.8e-05 0.0038 16.9 0.4 2 23 836 858 836 858 0.96
11 13 0.15 9.8 6.1 0.4 1 23 937 959 937 959 0.98
12 13 7.4e-05 0.0049 16.5 0.3 2 23 976 998 975 998 0.96
13 13 0.0031 0.21 11.4 0.4 1 23 1076 1099 1076 1099 0.98

Sequence Information

Coding Sequence
ATGGCGTCTACGTTAGCTCGGGGTCCTCCGATCTCGGAGTCCGGCGAGGTGGAGAGCGACGGTTCGAGCTGCGAGGACAACAGGGACGCGACGCTGAAGCGACCGCACGGCGACGCGGATTTGGCGGGCGGTAAAAAGCGACGGAAACAATCGACGCCGTTGCGTTTCCCGTCGTCCCTTGTGGCGGAGGACCGCgaagaggatgaggaggaggacgacgaggaggaggaggacgaagagtcccaggaggaggaggaggagggcgcGGTACGGGCGGCGCTCGACGGCGAAGGTAAGACAACGGTCGAACGGATCCGACGGACGTCGAaggacgaaaatttgaataacgaatTCCGATGCCAATATTGTAGTCTGTTGTTCGATAGCGAGCAAACGCTCGACCGTCACATTAACAGCGAGCACGATATCTCGCGGCCGGCTGTCCAGCGATCGCCGGTCAATTCGCAAATTCAGGTTAAGCAGGAATTCGGTCAGAGTCAGGAGCAGCCCGAGTGTCCCGTGAACCTGTCGGGTATCGGTATAAAAAGTTTCGCGGCCACGTGGTTGTCCGGTCAGGTCCAATCGCAGTCGCATCAGATCCAACTGCAGTCGCAAACCGACGAATGGCCGCCCTCGGGCTCCGCCGCCGCGGCCTCCCTCTCCTCCATCTCCAACCACCTTCAGGCCCTTCCGTTCCCCGGCGCCCTCGCCCAGTACCTACCTATGCCGAATTTTTCGCTAGCCTCGGACACCTCGGGACAGACGGCGAGCAGGCCGCCCATCGGCCCGGCGCCCATGAGGATATTCAATCCCGACGCCTACTGCGATCTTTGCAACAAGGAGTTCTGCAACAAGTATTTCCTCAAGACGCACAAGGCCAACAAGCACGGCATATACGTCGACACACCGGGTCAGACGGTCGGCGAGTCGGGTTTCCAGGCATCCGGATACTCCGGATCGTTCCTCTCGACCGGCcaacaccAACAGCCGCCGATGAAACTGGAGGCGTCCGCGGTTCCGGCTGTCATCCATGCGCCGTCCGTCCTCAATTCGCTCTGCGATATTTGTCAGAAACGTTTCAAAAACGAGGAATCGTTGAGGAGGCACAAGCAGAAGGTGCACAACGTCGACAACGTCGATTCCGGCGACTCTCTGATGCTCCCGCCCCAGACGAACGAAGACGAGAGGGATACCTCCCACCACAGTCTGAGCCCCGGTGCTATGGAGGCGCTGTTCAAGCAGGAATTCGGCGTCGAGCAGGAGGACACGACGTTCATGCCAGCGCCCAGACACCTCTCGCCCCAGTCGGTACAGCAGGCTAGGGACTCGGGGTTCAACGCCGACCGTTTGCGGAGACTGGGCGTCATCAATCCCGAGGCGTTCTGCGAGATCTGTTGCAAGGAGTACTGCAACAAGTACTTCCTGCGAACCCACAAGATGAAGAGGCACGGCGTGGTGGTCGTTCAGGAGAACGAGAAGTCGCCCAGCAATCCCGGAGCGGCGGCCGCCTGGCACCACGTTCAGACCAGTCCGTTGAATCTGATAGTGGGTGAGACCAGCGGTAACAGTTCGGAGTCGGGCGACCGTTTGGGCGACGATTACGAGTGCAAACCGTGCGGCATCAGGTTTCAAACTATGGGATTGCACCAGGCGCACCGCCGCAAGATCCACGAAACGGAGGAGGGCGCCTCGCCGAAACGTGAGAACGAAAACGACAACGGCGACCGACGGAGGGCCGACTCCATCAGCGAGGACCTCCAGAAGCTGCAGACGATGATCCTGCAGCTGAACGGTCTGGAGTCGGGGAGGGCGGCGTCCTGTCCGATATGCGGCAAGGACTCCGAGTCCAGACAGTCCCTGAGGAACCACATGACGTCGGAGCACGGCGCGCTCCTCGAGGACCCGGTCACCCCGCCCGTCCAGGCCAACGAGAAGTCGCCGCCGCCGAGCGGCGGCCCCTTGAACTGCGCGTTCTGCGACAAGGAGTTCTTCGGTCGGGAAACGCTGAGGAAACACGTGAACGAGGACCACCAGCCCTCGGCGCCCACGTCCGCCCCGCTGCCGTCGGCGACGCTACCGAACCCGGCGACCTCGTCGACGCCTAGCGCGccggccgccgccgccgccgccccccaAAACCAGGAGCGAAGGACCTCCTCCGTCTCCATGACGCCGACGTCCAGCTACTGCGAGATCTGCAACAAGGAACTGTGCAACAAGTACTTCATGAAAACGCACATGCAAAGGATGCACGGTATCGAGATAGAGAATGGCGCCCAGATAGGCGGCGTTATATGCAACATATGCAACAAGGAATTGTGCAGCAAGTATTTCCTGAGGGTTCACAAGCACAACACGCACGGTATAATCGAGGAGGGATCGGCGCCAACCGGCACCGCGAAACAGGCCGACAACGAGGCGAACCACCAGACCGCCGAGGACCCCGCCCTAAAACCGGAACAACTCGGCGACCTCAGTCACCGCTACTTCACCCACTTCACGGAGGTGTGTCCCATATGCAGCAGGAGATTCAGGAGCACCAAATGGCTGAAGGCGCACCTGCTCAGCGATCACGGGAAGATCGGCATAGACAAGTGGCGAGAGTTGGAGCAGCAGTACCAGTCGGGGCCGCGCGGCGGTAGGACCCCGGGCCCCTCGAGAGGCCCGCATCCCCAGAATCCTAACCTGAAAATACCGAACGGCATAGAAATGGCCGCCCAGCACCTGAAGAGCGGAGATTACGCCGGTCTGGGCAATCAGGTTCTGTCGACTCTGTTCGGCTCCGCGGAGGACCAGCAGATGAAGAGCTACCGTTGCTCCTACTGCGCGTTCACCACCCCGGTACTGGCGTTCCTCTTCGTTCACGAGCGGTCGCACACGAGTCCCCAGAGTTCCGGTTCGGCCGTCGAGGCCGAGAGGACCCTGCAGTGTCCCGTCTGTCTTCAGGGTTTTTCGCAGCCCGAACTGCTCCAGCATCACCTGCTCACTCAGCACCAGTTCCCGGGGCTGATTCCCCCCTTCCAGCCGCATCTCATGAACACATCCCGGCCCGAATCGTCATCGGAAAAGGACAGCGAGTCGAAGGACCGAACGGATTTAGACTCAAGGGACGATACGACGAAACGCTCGAGTCCCCAGACATCCGGCGGCGCGTCCTTCAACGACCTACAGAAAATTCAGCGACCGGAAGACGCCACGGCGGTACAGGTTACGCCGCAGGGTGCTTACAAGTGCGCCCAGTGCGGTTACGCCACCGCCAATTTGAACCGGATCAAGAAGCACATCAGGAAGGATCACAGGACGATCGCGGCCGGCGATCCTTCGGAGACGGCTATCGGCGAGTTGACCCGGACGTTGAAAGACGTGTCGAACAAACACAGGATACCCGCCAGTTACGCTATGCCGCAGGACATGAATTCGAATCCTGAAAAAACGATAATGCAACCGTTTCTCATCGAGGAATGCGGCGAAATTATTCACGGCTCGTCGGAGTCAAACGCGGAGAAAAAGTTCGCGCCGGCCCTCGTTTACCTGCCGGTAAAAACGCGAATAAATGCTCCGTTAACGGCATCCTTCAATCTCAGTCCtgcctga
Protein Sequence
MASTLARGPPISESGEVESDGSSCEDNRDATLKRPHGDADLAGGKKRRKQSTPLRFPSSLVAEDREEDEEEDDEEEEDEESQEEEEEGAVRAALDGEGKTTVERIRRTSKDENLNNEFRCQYCSLLFDSEQTLDRHINSEHDISRPAVQRSPVNSQIQVKQEFGQSQEQPECPVNLSGIGIKSFAATWLSGQVQSQSHQIQLQSQTDEWPPSGSAAAASLSSISNHLQALPFPGALAQYLPMPNFSLASDTSGQTASRPPIGPAPMRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDTPGQTVGESGFQASGYSGSFLSTGQHQQPPMKLEASAVPAVIHAPSVLNSLCDICQKRFKNEESLRRHKQKVHNVDNVDSGDSLMLPPQTNEDERDTSHHSLSPGAMEALFKQEFGVEQEDTTFMPAPRHLSPQSVQQARDSGFNADRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGVVVVQENEKSPSNPGAAAAWHHVQTSPLNLIVGETSGNSSESGDRLGDDYECKPCGIRFQTMGLHQAHRRKIHETEEGASPKRENENDNGDRRRADSISEDLQKLQTMILQLNGLESGRAASCPICGKDSESRQSLRNHMTSEHGALLEDPVTPPVQANEKSPPPSGGPLNCAFCDKEFFGRETLRKHVNEDHQPSAPTSAPLPSATLPNPATSSTPSAPAAAAAAPQNQERRTSSVSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIIEEGSAPTGTAKQADNEANHQTAEDPALKPEQLGDLSHRYFTHFTEVCPICSRRFRSTKWLKAHLLSDHGKIGIDKWRELEQQYQSGPRGGRTPGPSRGPHPQNPNLKIPNGIEMAAQHLKSGDYAGLGNQVLSTLFGSAEDQQMKSYRCSYCAFTTPVLAFLFVHERSHTSPQSSGSAVEAERTLQCPVCLQGFSQPELLQHHLLTQHQFPGLIPPFQPHLMNTSRPESSSEKDSESKDRTDLDSRDDTTKRSSPQTSGGASFNDLQKIQRPEDATAVQVTPQGAYKCAQCGYATANLNRIKKHIRKDHRTIAAGDPSETAIGELTRTLKDVSNKHRIPASYAMPQDMNSNPEKTIMQPFLIEECGEIIHGSSESNAEKKFAPALVYLPVKTRINAPLTASFNLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00060630;
90% Identity
-
80% Identity
-