Basic Information

Insect: Athalia rosae
Gene Symbol: -
Assembly: GCA_000344095.2
Location: NW:276874-281608[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.001 0.067 12.9 0.8 1 23 220 243 220 243 0.97

2 10 5.7e-06 0.00038 20.0 0.4 1 23 249 271 249 271 0.99

3 10 1.1e-07 7.5e-06 25.4 0.3 1 23 277 299 277 299 0.99

4 10 0.0058 0.38 10.6 0.4 1 23 305 327 305 327 0.98

5 10 1.6e-06 0.00011 21.8 0.2 1 20 333 352 333 353 0.96

6 10 0.018 1.2 9.0 2.4 1 23 362 382 362 382 0.94

7 10 7.8e-07 5.1e-05 22.8 0.5 3 23 390 410 389 410 0.98

8 10 7.9e-05 0.0052 16.5 1.4 1 23 416 438 416 438 0.98

9 10 0.00072 0.047 13.4 2.5 1 21 444 464 444 467 0.96

10 10 0.00089 0.059 13.1 0.7 1 20 473 492 473 494 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.001	0.067	12.9	0.8	1	23	220	243	220	243	0.97
2	10	5.7e-06	0.00038	20.0	0.4	1	23	249	271	249	271	0.99
3	10	1.1e-07	7.5e-06	25.4	0.3	1	23	277	299	277	299	0.99
4	10	0.0058	0.38	10.6	0.4	1	23	305	327	305	327	0.98
5	10	1.6e-06	0.00011	21.8	0.2	1	20	333	352	333	353	0.96
6	10	0.018	1.2	9.0	2.4	1	23	362	382	362	382	0.94
7	10	7.8e-07	5.1e-05	22.8	0.5	3	23	390	410	389	410	0.98
8	10	7.9e-05	0.0052	16.5	1.4	1	23	416	438	416	438	0.98
9	10	0.00072	0.047	13.4	2.5	1	21	444	464	444	467	0.96
10	10	0.00089	0.059	13.1	0.7	1	20	473	492	473	494	0.94

Sequence Information

Coding Sequence: ATGACGAACGTCGAGGGACCTTCTTCGAGGGCGGAAAATTTCTCCGGTGCGGAGAGCGCGCCGCTCAGGGAGCCGGGGGTCCAACTGACGGAGCTGCTCCCCGTGAAAAAGATGGCGGCGATCACGGAGGACGAGGCGGTAGCCGACGCGTTCAAAGCGTTGCGCGAGGGCAACAAACACTTTTCCATAAACGGTGGGGAATTCAGGGGCGACGAGAACGAGGGTGGAATCGATAACGGCGGACTGCACGGAGGAGAGGAGGGCGCCCCAAGGGTGACCGGCGAGAAACGGGGTAACCGGGTCCACGACAAGCGCGTCAAGTATCTGGAGAATCGCGCGAGGACGAAACAACGAGTACGAACGGAGGAGGCGAAGCGGAAAATCGCCGTCGTCGGCGGCGGCGCGCTCGACGATCCGTCGAAAATCGAAGCGAGACGCGCCTCGGATTCCGCCGACGACTCGAGGGGCGACGACGATCACGGCCTGCGCGAGAAGATAGACGCGATAATCCAGGCGAATTACGTCCTCGAGCGTAAAAACAACAACACCACGcgcgaaaatttgaacagtCCGAAGAACTCGGAGTCCACGGAGAACTCCGACGGCGTCGCGTCCACCAAGACGGAGGGCGCGggcccccgccccccgccgaAGAAGCACAGGTGCGCCGTATGCAAGGCGAGATTCAAGGGGAGCGGCGGCCTCAGGACCCACTACAAGGTCGTGCACGCGGCCGGTCCGACCTTCACGTGCGACGAGTGCGGCAAGGAGTTCCCGCTCAAGGAACGGCTGAAACTCCACGTGAGGACGCACACCGGCTACAAACCCTACGAATGCAACGAGTGCGGGAAGAGCTTCGCGCGCGGCGGTCAGCTGGTACAGCACCGGCGCACGCACACTCAGGTGAAACCCTACCGCTGCCTCATCTGTCCGGGGACGTTCTCGTGCGCGGCCAATCTCGCCCTCCACGTGAAACGTCACAACGGCCAGAAGGACCACAAGTGCGACATATGCGGCCGGGCGTTCGTCAGGCGAGACGCGCTCAAGAAGCACCTCGAGTGCCTCCACAAGGACGTCAAGTCATTCCTGTGCGTGATATGCAACAAAACGTTCAAAGGACACCTGCCGCAGCACATGAGGACCCACGCGCAGGACAGACCGCACGGTTGCGCTACCTGCGGCCAGAGGTTCGCCCAAAAATCGCAGCTGACCGTCCACCAGAGGACGCACTCCGGACAGCGGCCGTTCCGCTGTTTGGTCTGTTGGCAGGCGTTCGCGCATTCCACCGCCCTGAAGTTGCACACGAGACGGCACACGGGCGAGAGACCGTTCAAGTGCGCCGAGTGCAACGCCGGCTTCACCCAATTGCCCCACTGGAAGAAACACATGCGATGCGTCCACGGTAGGACGGATCCCTACCGCTGCAAGAACTGCGACACATTTTTCAGGATAAAAAACGACCTGGAGACCCACGAGAAGGGATGCGTCGTCGAGGAACAGAGGCTGGGGAACCCCGAGGCCGAGAATCGGGGGGGTTCGGGTCGCCCCGTGGTACCGAAGTACCGGATCATGACCGTGGAGAAGATGAGGCTGCTGCTCGCGGTTTTGTTCAAGAGGATCTCGAAACCGGAACGGCTGGACGAGTTGGGATTCGGGAAGCGATTGATCGACCAGGTCCTGGAGGACTCGTTGCTGTCCGCCGGCAAATATCCCGCGGAGAGCAACGATTGCAGCGAGTTCGAGGtgctgaagaaaaatttggccACTTTTTTGGAGTGGACGGTGCCCAGGGAGCACTGGGAGGCTTttaagaaattgaataaaacgcCCGAAGAGATACTGGAGACGCTGACGGTCAGTCAGTAG
Protein Sequence: MTNVEGPSSRAENFSGAESAPLREPGVQLTELLPVKKMAAITEDEAVADAFKALREGNKHFSINGGEFRGDENEGGIDNGGLHGGEEGAPRVTGEKRGNRVHDKRVKYLENRARTKQRVRTEEAKRKIAVVGGGALDDPSKIEARRASDSADDSRGDDDHGLREKIDAIIQANYVLERKNNNTTRENLNSPKNSESTENSDGVASTKTEGAGPRPPPKKHRCAVCKARFKGSGGLRTHYKVVHAAGPTFTCDECGKEFPLKERLKLHVRTHTGYKPYECNECGKSFARGGQLVQHRRTHTQVKPYRCLICPGTFSCAANLALHVKRHNGQKDHKCDICGRAFVRRDALKKHLECLHKDVKSFLCVICNKTFKGHLPQHMRTHAQDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCAECNAGFTQLPHWKKHMRCVHGRTDPYRCKNCDTFFRIKNDLETHEKGCVVEEQRLGNPEAENRGGSGRPVVPKYRIMTVEKMRLLLAVLFKRISKPERLDELGFGKRLIDQVLEDSLLSAGKYPAESNDCSEFEVLKKNLATFLEWTVPREHWEAFKKLNKTPEEILETLTVSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -