Basic Information

Insect: Athalia rosae
Gene Symbol: -
Assembly: GCA_000344095.2
Location: NW:130748-138774[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00028 0.019 14.7 4.1 1 23 230 252 230 252 0.97

2 11 8.8e-06 0.00058 19.4 1.5 1 23 258 280 258 280 0.98

3 11 0.00066 0.044 13.5 3.8 1 23 286 309 286 309 0.95

4 11 0.0088 0.57 10.0 5.2 1 21 315 335 315 337 0.95

5 11 8.8e-05 0.0058 16.3 1.9 1 23 343 365 343 365 0.99

6 11 1.1e-05 0.00069 19.2 0.4 1 23 371 393 371 393 0.98

7 11 0.00022 0.015 15.0 1.4 1 23 401 424 401 424 0.97

8 11 3e-05 0.002 17.8 2.7 2 23 431 452 430 452 0.97

9 11 8.8e-05 0.0058 16.3 0.3 1 23 458 480 458 480 0.99

10 11 0.002 0.13 12.0 7.1 1 19 486 504 486 509 0.91

11 11 9.8e-08 6.4e-06 25.6 1.2 1 23 523 545 523 545 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00028	0.019	14.7	4.1	1	23	230	252	230	252	0.97
2	11	8.8e-06	0.00058	19.4	1.5	1	23	258	280	258	280	0.98
3	11	0.00066	0.044	13.5	3.8	1	23	286	309	286	309	0.95
4	11	0.0088	0.57	10.0	5.2	1	21	315	335	315	337	0.95
5	11	8.8e-05	0.0058	16.3	1.9	1	23	343	365	343	365	0.99
6	11	1.1e-05	0.00069	19.2	0.4	1	23	371	393	371	393	0.98
7	11	0.00022	0.015	15.0	1.4	1	23	401	424	401	424	0.97
8	11	3e-05	0.002	17.8	2.7	2	23	431	452	430	452	0.97
9	11	8.8e-05	0.0058	16.3	0.3	1	23	458	480	458	480	0.99
10	11	0.002	0.13	12.0	7.1	1	19	486	504	486	509	0.91
11	11	9.8e-08	6.4e-06	25.6	1.2	1	23	523	545	523	545	0.98

Sequence Information

Coding Sequence: ATGTCAAGTAACGTAGCAGAGATAAAGTTGGAGGAAGGTCCAGAATCTGTGACGGAGATCCAGACCTACTTAGAGACTTTTAACAAGGAAATTGAAGGTGGTCAGGGTGAACAACTGCAACATGTGCAATTGCAGCAAGTAGAAGGCCTTGCGGGAAGTGATGATGGAGGTACTTATTTTGTCGATCAATCTGGCCAGTATTATTACCAAGCAAGCAGTGACGATGCACCAGTCATAACACAGGTACAAATTCAGGAAGCTGAAGATGGAGATGTACAGAATGAGGGAGACGAAGTTGTGGAAGATCAGTATCATGAAATAGAAGAGCTAGAGAGTGTGGACACTGGCGAAGATGCTGGAAAACagGAAGTAGTATCGACAAATGGGAGTAATCAGATGGTTATAAATTCCGGGGATGCTTATCAAACAGTGACTATTGTGCCATCTGATACAAATCCAGGAGAAGTAAGCTATGTGTTAATTGTTCAGCAACCTGAGtctgaagagaaagaaatcagAGCAGATGACGCAGAAGTAGTTGAAGGGGAGGATGGGGAGCAAGACCTGACGGTCTATGATTTTGAAGATAATGAAGACAACGAAGCACCTGTTGAATCTGAAGCTGAAGATGATAAGACTAAAATTATCAAGTTCATCCCCAAGAAATCGCAGACTGTTACTCAGGCTCACATGTGCAATTACTGCAACTACACAAGTCCTAAGCGCTACCTCTTATCACGCCACATGAAATCTCATTCCGAGGAAAGGCCACACAAATGCAGCGTTTGCGAAAGAGGCTTTAAAACCTTAGCCTCTCTACAGAACCACGTCAATACGCATACAGGAACAAAGCCCCATCATTGCAAATTCTGTGACAGTGCTTTTACTACATCCGGTGAACTTGTAAGACATGTTCGGTACAGACACACCCATGAAAAACCGCACAAATGCCACGAGTGTGATTACGCCTCGGTTGAGTTGTCCAAACTTAAACGACACATTAGGTGCCACACCGGAGAACGTCCCTATCAGTGCCCGCACTGTACATACGCAAGTCCAGATACCTTTAAGCTAAAGCGTCACTTGCGTATTCACACCGGTGAAAAACCATACGAGTGTGATATTTGCCAAGCAAGATTTACGCAATCTAACAGTTTGAAGGCACACAAGTTAGTCCACAATGtAGGAGATAAGCCAGTATTTCAATGTGAACTATGCCCGACTACCTGCGGGAGAAAGACGGACCTCAGGATTCACGTTCAGAAGTTACACACCTCTGATAAACCCCTCAAATGCAAGCGATGTGGCAAGACATTCCCTGATAGGTACAGTTACAAACTTCACAATAAAACACACGAAGGTGAAAAATGCTACAAGTGCGATCTTTGCCCTTACGCGTCAATATCAGCGCGTCACCTTGAAAGTCACATGCTAATTCATACAGATCAGAAGCCGTACCAATGTGATCATTGTTACCAGTCGTTCAGACAAAAACAATTGTTGAAACGTCACTGCAATTTATATCACAATCCATCTTACGTACCGCCACCACCTCAAGAGAAGACCCACCAATGTCCGGAGTGCGAAAGACCTTTCAGGCATAAAGGCAATCTTATTCGACACATGGCTGTTCACGACCCAGAATCATCTCTTCAAGAAAAACAGCTTGCTCTTAAAATTGGTCGTCAAAAGAAGATCCAAATCATTGATGGTCAGAGGGTTGAAGTCATGACTGGAGACTTAGCTTCTAAACTTAAAGGTTatgacgatgaagaagaagaagacgaggatGAAATGATGGCTGTTGAAGGAAGCGATGGGCAACAGTATGTTGTCCTCGAAGTTATTCAGTTAGCTGACAACCAAGGAACTGATCAGCAAATGGCAGTTGTCGCCAGTGAAGATGGTGATTTGGTAATGCAAGATCCGTTGGGTCAAGATGGCGTAGTTGAGGGAACAGAAGAAATGGGAGAGGAGatggaagaggaggaggaagaagaagttgTATTGAAACTAGAAGATTCGGCTCCTACTCCCCCTCGTCGGTCAACACGATCGTCACAACCCTCTCAAAGTGACCCAAAGTTGAGAAAAGACATGGAGACTTGCTTTGGTTTTGACGAGgaagaagaagaagatgacgaagaTGACAGCAACATCCATCTACTGCAGTCAATTTCGTAA
Protein Sequence: MSSNVAEIKLEEGPESVTEIQTYLETFNKEIEGGQGEQLQHVQLQQVEGLAGSDDGGTYFVDQSGQYYYQASSDDAPVITQVQIQEAEDGDVQNEGDEVVEDQYHEIEELESVDTGEDAGKQEVVSTNGSNQMVINSGDAYQTVTIVPSDTNPGEVSYVLIVQQPESEEKEIRADDAEVVEGEDGEQDLTVYDFEDNEDNEAPVESEAEDDKTKIIKFIPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKFCDSAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICQARFTQSNSLKAHKLVHNVGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSYKLHNKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCYQSFRQKQLLKRHCNLYHNPSYVPPPPQEKTHQCPECERPFRHKGNLIRHMAVHDPESSLQEKQLALKIGRQKKIQIIDGQRVEVMTGDLASKLKGYDDEEEEDEDEMMAVEGSDGQQYVVLEVIQLADNQGTDQQMAVVASEDGDLVMQDPLGQDGVVEGTEEMGEEMEEEEEEEVVLKLEDSAPTPPRRSTRSSQPSQSDPKLRKDMETCFGFDEEEEEDDEDDSNIHLLQSIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01001593;
90% Identity: iTF_00174511;
80% Identity: -