Basic Information

Insect: Athalia rosae
Gene Symbol: prdm10
Assembly: GCA_000344095.2
Location: NW:503313-511871[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0019 0.12 12.1 0.6 2 23 485 506 484 506 0.96

2 14 5.2e-08 3.4e-06 26.5 0.9 1 23 540 562 540 562 0.98

3 14 0.0052 0.34 10.7 1.9 1 23 570 593 570 593 0.97

4 14 0.0015 0.097 12.4 0.1 2 23 610 631 609 631 0.96

5 14 0.00083 0.055 13.2 0.1 3 23 645 665 643 665 0.93

6 14 0.0067 0.44 10.4 3.8 1 23 682 704 682 704 0.91

7 14 0.0075 0.49 10.2 2.0 2 23 713 734 712 734 0.96

8 14 0.0093 0.61 9.9 0.1 1 23 741 763 741 763 0.98

9 14 0.00014 0.009 15.7 3.8 1 23 770 792 770 793 0.95

10 14 0.001 0.068 12.9 3.9 1 23 798 820 798 820 0.98

11 14 4.4e-05 0.0029 17.2 4.4 1 23 826 849 826 849 0.96

12 14 0.0012 0.081 12.7 1.7 1 23 882 905 882 905 0.97

13 14 9.5e-05 0.0062 16.2 2.0 1 23 927 950 927 950 0.95

14 14 0.0028 0.18 11.6 3.4 3 23 988 1009 988 1009 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0019	0.12	12.1	0.6	2	23	485	506	484	506	0.96
2	14	5.2e-08	3.4e-06	26.5	0.9	1	23	540	562	540	562	0.98
3	14	0.0052	0.34	10.7	1.9	1	23	570	593	570	593	0.97
4	14	0.0015	0.097	12.4	0.1	2	23	610	631	609	631	0.96
5	14	0.00083	0.055	13.2	0.1	3	23	645	665	643	665	0.93
6	14	0.0067	0.44	10.4	3.8	1	23	682	704	682	704	0.91
7	14	0.0075	0.49	10.2	2.0	2	23	713	734	712	734	0.96
8	14	0.0093	0.61	9.9	0.1	1	23	741	763	741	763	0.98
9	14	0.00014	0.009	15.7	3.8	1	23	770	792	770	793	0.95
10	14	0.001	0.068	12.9	3.9	1	23	798	820	798	820	0.98
11	14	4.4e-05	0.0029	17.2	4.4	1	23	826	849	826	849	0.96
12	14	0.0012	0.081	12.7	1.7	1	23	882	905	882	905	0.97
13	14	9.5e-05	0.0062	16.2	2.0	1	23	927	950	927	950	0.95
14	14	0.0028	0.18	11.6	3.4	3	23	988	1009	988	1009	0.98

Sequence Information

Coding Sequence: atggatCCTGGGGGCCCTCCTGAGGGGGCCCCTGGTGAACCCTTGGAAATGGCAGGTATCGACAAAGTTGATGTCACCGAAAGCTGGCCTTCCGAACACAACACCTCACCTCCAATGACCGATCAACCCAGGAAGATGAACAACAGGCTACTCTTTCTTGCTGTTGAGTACGTCGAGGATAATTCCAAAGATTATTCCCGTATTTTTCCCCCATATGAGcaggtttctttttcttctcaagcATCTTCACCCCTTTCCGATTTTGAACATCGAGTGAGTCCATTAGATCCGAACATGAGTTCTGCAGCTAGGTATTCGCCGACTCCTGTTCAACTACCTCCCTCCCCATTCCATAACTCTGTTGTTGTTCTTCAAGGCCCATCCTCCCCCCTGATTCCTACATCTGATCAGAATGTCAGACCGACCATTAATTATGTCACACAATTGACTGATCAATCCACCGCTCAAACTGTCGTTCAACCTGATACTACCTCAGATTTTGTTGTTGCTGGCAATGAGGAGGGCCTTGATGCTGGTGTTAGTGGCGAATTAATTCTAATGCAAGGTGCAGCTCCAGAACTGGAAAATTCAGCTGCCCCATTAATGCTGGCTGAAATACCCAGCACCGACTTTGCTTTGGCTAGAGATTTTCTCGTTGCACATGATGAGCAGCTGAACGTGATGACTgcatataaaaatcaaaatcttgGGATTGAAGATGTGAAGGTTAGTCATCTGGAAATGAAAGGGGAAGAGTTGCAGCTGGAAGTTCATCCATCAGAAAGTACCAACAATCAAATGTTGCCTGATATCATAAACAATGGTGTAACAAAATCTGATAAAAAAGGAGTGCGGAGATCCAAGCGACAAATTAATGACAAAAAAGCGTTGTGGTGTAGCGAATCCGATGCAGATTGTGTGAATGTTGGAAATTGCACAATACATAATGTTCAGACGATTGCGGATCAGCCTGTACCTTCAAGAGCCAGGGCAACCCTGCCTGGTTCATATCTCACTATAAATAAGCTAACGATGTCAAACATTGTGCCAGGTGGATCATCCTATGGCGTTTTCGCAAAACGTAATATACCAAGGCGCACTAAATTTGGTCCAATTGAAGGAATTTTGTGCACTTACGAGGGAACAGTTGCACAGAATACATTGCCGCTGTTGTACCAAACGGATAATggcaaatttttaaaaatagacgTTTCAGACGAAAATGCTTCAAATTGGATGCGTTTTGTGAGACCTGCTTCTACGTACAAGGAGCAAAATCTGATAATCAGTCAACAAGGTGAGGGAATTGTTTTCCTCACAATTAGAAATATCCTCCCAAAAGAAGAACTGAGAGCGGGTCCCAGCCCAGAATATGCTAGCTCGAGGAATTTGATGGTGCTTATACCTGATCGAAAGGATGAAACGGAATTGAATAACGAACGGAATCCCTGGCCATGTTTTGAGTGCAATCAGCGCTTCCTAACATCAGAGAAGCTGCAGAAACATCTTAATGTCCATGATGGCCCAAGAATTGATGTTAAACAACGTAACAAACGCAAGAAAATTCACACTCCTTCGAACAAACTCTTCAAGATTGTGGATGGTCAAACCGTGTTATACACATGTCCATACTGCTCGAAGGTTTTCCCTCGAAGCTACAGTTTGAAACGTCACTTGCTTATTCACCCAGGAGCAAAAGCACCACGATACGAGTGTCAAACTTgtggggaaaattttcttcacccttACAACCGTAGTCGACATATAAAGATATTCCATAGTGGAGGTTccaacgagaaagaaaataaacaaaataccTCAGAATGGAAGTGTTTGACATGCGGCTTGATATTTACAAAAGCTGCACTTCTGAATTTGCACACATTAATTCATGGTGCTGATGATCAGAAGATTGGAAGTCAAACCACCAATTGTCCACAGTGCGGATTAGGATTTGCAAAACAAAATGACCTCGTTCGTCACGTTGCTGATCACGCCAGGCAGCAAGCTCCAAAAACTAGGAAACAAACTCCGTTGGCAGCCTACAAATGTTCAATGTGTTACAAACGATTTGCGACTAAAGTACGTTTGCAGCAGCATTGTTTAGTCCATGGTGCCGATGATCAGAAGCCACTGCCATGTAACATTTGTCTTAAAAGGTTTATGAACAATTCTGCATTATCGTGTCATCTGAAAACGCATAGAGaagataaacaaattttcgaatgccCAATGTGCAGGCAACTATTTGATCAAGTATTAATGTTGAAAGATCATATCGAAACACATCGAAGCGAGGATGGAACTTTTAATTGCCCTCATTGTCCAAGATCCTTTACTAAATACTCTGTAATTAGAAAACATATCAGAGCTCACCACTGCGAACGAAAGCATAAATGTCAATTCTGCACAAAACGTTTTCCTACTGTTGATAAATTGAGAATGCACTTGCTACGCCACTCTGACCACAGGGAATTTCATTGCGCCAATTGCGATAAGcaatttaaaagaaaagataagTTGAAAGAGCACATGACAAGAATGCACAATgccgaaagagaaaatcagcAGCAGACGGCACAGGGACAACAAGCCAAGAAATTTGTACCAAAgGTCAATCCCACCGATTACAATCGTTTCATCTACAAGTGTCATCAATGTTTGGTTGGGTTCAAGAGACGCGGCATGCTTGTTAATCATCTAGCCAAACGACATCCGGATGTACCTCCAGAATCAGTTCCTGAATTGAATTTGCCAATTCTCCGACAAACAAGGGACTACTATTGTCAATACTGCGATAAGGTCTACAAAAGCAGCAGTAAACGGAAAGCGCACATCGTGAAGAACCATCCCGGCGCTGCATTGCCGCCGAGTAATCGACGTAAAGAAGCTGATGTACCAGGAGTACCAAATCCAACTTTCAGTCAGACTGTTGGTAGCATTACTACAACTCCCCAAGGATGTCAGTGGTGTCACAAACAATATGCCAGCAAGGCCAAGCTTCTGCAACACCAACGTAAGAAGCATCCAACTTTAATGGAGCCTGCGTTTCAAGTACCGCGTCCTCGTAACCGTCATTCCCAGGGCCAAAATCTCCACTCTACCATGAccgacaataattttttgatgtcTGACTACATCCAGGCTTACGATATAGATactgattttttgaaaccAAAAGTGATAAAGCTAGTGGATGGCGTCGATCTTATCGGTAACGGTCTCGACATGGTAGGTCAGCAATTTTTGCGAATGCGTgatatacgttga
Protein Sequence: MDPGGPPEGAPGEPLEMAGIDKVDVTESWPSEHNTSPPMTDQPRKMNNRLLFLAVEYVEDNSKDYSRIFPPYEQVSFSSQASSPLSDFEHRVSPLDPNMSSAARYSPTPVQLPPSPFHNSVVVLQGPSSPLIPTSDQNVRPTINYVTQLTDQSTAQTVVQPDTTSDFVVAGNEEGLDAGVSGELILMQGAAPELENSAAPLMLAEIPSTDFALARDFLVAHDEQLNVMTAYKNQNLGIEDVKVSHLEMKGEELQLEVHPSESTNNQMLPDIINNGVTKSDKKGVRRSKRQINDKKALWCSESDADCVNVGNCTIHNVQTIADQPVPSRARATLPGSYLTINKLTMSNIVPGGSSYGVFAKRNIPRRTKFGPIEGILCTYEGTVAQNTLPLLYQTDNGKFLKIDVSDENASNWMRFVRPASTYKEQNLIISQQGEGIVFLTIRNILPKEELRAGPSPEYASSRNLMVLIPDRKDETELNNERNPWPCFECNQRFLTSEKLQKHLNVHDGPRIDVKQRNKRKKIHTPSNKLFKIVDGQTVLYTCPYCSKVFPRSYSLKRHLLIHPGAKAPRYECQTCGENFLHPYNRSRHIKIFHSGGSNEKENKQNTSEWKCLTCGLIFTKAALLNLHTLIHGADDQKIGSQTTNCPQCGLGFAKQNDLVRHVADHARQQAPKTRKQTPLAAYKCSMCYKRFATKVRLQQHCLVHGADDQKPLPCNICLKRFMNNSALSCHLKTHREDKQIFECPMCRQLFDQVLMLKDHIETHRSEDGTFNCPHCPRSFTKYSVIRKHIRAHHCERKHKCQFCTKRFPTVDKLRMHLLRHSDHREFHCANCDKQFKRKDKLKEHMTRMHNAERENQQQTAQGQQAKKFVPKVNPTDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVPPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNRRKEADVPGVPNPTFSQTVGSITTTPQGCQWCHKQYASKAKLLQHQRKKHPTLMEPAFQVPRPRNRHSQGQNLHSTMTDNNFLMSDYIQAYDIDTDFLKPKVIKLVDGVDLIGNGLDMVGQQFLRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01049132;
90% Identity: iTF_00174512; iTF_00175260;
80% Identity: -