Aros008061.1
Basic Information
- Insect
- Athalia rosae
- Gene Symbol
- ZEB2
- Assembly
- GCA_000344095.2
- Location
- NW:332993-336392[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.8e-06 0.00019 21.0 4.1 1 23 273 295 273 295 0.98 2 12 0.072 4.8 7.1 4.9 1 23 300 322 300 322 0.97 3 12 5.3e-05 0.0035 17.0 0.9 2 23 332 353 331 353 0.97 4 12 3.4e-06 0.00022 20.8 7.9 1 23 438 460 438 460 0.98 5 12 0.0011 0.07 12.9 1.1 1 22 465 486 465 489 0.90 6 12 1.6e-06 0.00011 21.7 0.4 1 23 528 551 528 551 0.94 7 12 4e-07 2.6e-05 23.7 1.1 1 23 584 606 584 606 0.98 8 12 0.00012 0.0076 15.9 4.0 1 23 620 642 620 642 0.96 9 12 0.00011 0.0072 16.0 4.7 1 23 648 670 648 670 0.98 10 12 0.00097 0.064 13.0 3.2 1 23 676 698 676 698 0.98 11 12 0.00011 0.0071 16.0 6.0 1 23 704 726 704 726 0.96 12 12 0.00015 0.01 15.5 0.3 1 21 732 752 732 753 0.93
Sequence Information
- Coding Sequence
- ATGGACGTTGAAATCGAAGGAAGTATTGCCCTGGAAAATTTGGATAGAGTTTGTCGGGTCTGTCTCTCTACGGATGGAAATAACCAGTACATATTTCAAGATGATATTGGGGAAAAGGAAGTGGGTGATACTTTTACGCTGTCCCAAAAACTCCAGGTTTACGGTGGCATAGAGATCTGGAAAGATGATGGGCTTCCAAGCAAAATTTGCACCCCTTGCATTTCCAAAATTAGAGTTGCACATGATTTTCGCGACCAATGTCAAAAGGCTGATGAAAAGCTACGGATACTGTGTGGAAAATCACCTGGAAAAGGGAATCTCCAAGGGTCAAAATTTGATAGTTTCAAGGATCAAGACTGTCAAACAGATACATCTTCGCTGTGTACTCCTGTTAAAAAAGAACTCAGCTCAGCAGTGAAGGAAGACTttgacaaaatcaaaaaagaaaacattttaAATACTAACTCATATCCGAATTCAGTCACAAGCACAGAGGCTCTTCGGGATACTTGTCAAAAAGATATAGAGATTCATGAACACAAAATTCTTCTAGCTGACGATTTTGGGCCATGTCGATcgatagagaaagaaaaaacctctTTCAAAAAAGATTCAGCGTGTAGATCGAGAAGGATCGCTGTGTTTAAGAGAATCACTtctattcaaaatttgaagagTCACAGAGAAAGACAGAGAcaatacattaaaaaaaatcctaccTCACGATCAGAATCTAATGACCAAGAGTTCAGTAACCGAAATATACGGAAAAGAGCAATCAGGCCTGCAATCATCAATTTTCAGGCTGAATTCTCCCATAAATGTAATAAATGCAGCAGATCTTATGCAACGAAAACGTCGTTGGAAAGGCACATGTTGACTCACAATGACAAGAAATTCAAATGTGACAAATGTTGTAAACATTTTGTCAGACTTGATAAGTTGATAGAACATGGAAAGCTGCACGATCCAGAAGTCAGACCTAATCCAGTGTCCTGTAAAATATGCGATAAAAACTTTAGAAAAACAGATACTATGGTCAGGCATCTGAACGTCCATAAAAAAGCTAATCCTAAagaagttttttcaattttaaaagaTATCAGAGACAAAAGGAGATCTGAAGATGcaggaaaagatgaaaagagacTACTCACTAAGGAAGAAAGCAGCAGTGGAGATGAAACTGAAACTGTGGAAACTAGCGGACTTGTTCCAAAGTCAACTAACAGTCGAGCCTATAATCCAGAATCACCCAACTCGGATTCGCATAGTTCAAGTGAGCCATATTCGTTGAATAGTTTGGCTTTTTACAGATGTAAACATTGTACTAAGTGTTACTCAACAAACAAATCTCTACAAAGACACATGTTGAtacatgatgaaaaaaaatttgtctgcAATGTTTGTAACATGAAATTCTTCAGACCAGACAGACTCAAGAGCCATAGGGACAGATACGGTCATGACGAGGATAAAGAGTGTATGGAGCCCCAGAAGCCACCTGACGATAAATCagcaattaaattaataaatagtTGGATACGAGAACAGCTAGATTCAGATAACGAAGGGAAGGGATTCCCGTGTGATGTATGTGGTAAATCTtatgtgacaaaaaaatctcttcaaaAACACAGAGCAAATATACATGCCAGTAAGACCAACATTTGCACTGTATGTGGAGAAGATTGCAAGTGcttggaaaaatcaaataatgacgataataagaTAGACAAATCTAAGCCTTACAGCTGTGACGAATGTGATAAGTCCTTTGAAAAGGAATCTAAACTCAAAACGCACCTAAGAATTCATGAACGAGCTAAAGAACAACaggattcaaatttcaaacgatttctATGTCATATTTGCAGTAAAACCTTTAGACAAAATACTGGACTCATGTTTCATATGCGAACACATACTGGCTACAAACCACACGTATGCAAATACTGTGGGAGAGGTTTTACGTCAAACTCAAACTGCATTAATCATGAGAGAACTCACACTGGTGACCGGCCATttgtttgtcatttttgtagTGCTGCTTTTGCAAAATCTTGTACACTGAAGGCGCATATTACAACTCACACCGGGGAAGCCAACTACCACTGTAAGACATGTGGGAAGTCGTTCCGCAGATTAAAGTATCTGAAAGAGCACAGTTTCACTCACACAGGAGAAAAACCATATGCTTGTAAAATTTGTGGAACTGCTTACAGCCATTCTGGTAGTTTATTTGTCCATGAGAAGAAATGCAAAGCTCAATACAGCAATTATCAAAATGTGTCCagtcaaaatacacaaaacTATGTGCAATTGCAAACTGGTGTGAATGTATCACCTATTGTTGCCCCCATAATTCCCATGTTGTCTGCTTCTagtaatttgaataatgtGAACAATACTCTGGGATCTCATGGTCAGAAAAGTTACATAGAAAATATGCAGAGAATGAGTGCACATGTggctgcagcagcagctgttgGAAATCCAGGGTTGCACATGCATTCTAATTCTGATGTGTCAGAAATGGCTTCTGCTGTGAGGAGTTTTACCATTACACAAGTTTTTCACTCGTAA
- Protein Sequence
- MDVEIEGSIALENLDRVCRVCLSTDGNNQYIFQDDIGEKEVGDTFTLSQKLQVYGGIEIWKDDGLPSKICTPCISKIRVAHDFRDQCQKADEKLRILCGKSPGKGNLQGSKFDSFKDQDCQTDTSSLCTPVKKELSSAVKEDFDKIKKENILNTNSYPNSVTSTEALRDTCQKDIEIHEHKILLADDFGPCRSIEKEKTSFKKDSACRSRRIAVFKRITSIQNLKSHRERQRQYIKKNPTSRSESNDQEFSNRNIRKRAIRPAIINFQAEFSHKCNKCSRSYATKTSLERHMLTHNDKKFKCDKCCKHFVRLDKLIEHGKLHDPEVRPNPVSCKICDKNFRKTDTMVRHLNVHKKANPKEVFSILKDIRDKRRSEDAGKDEKRLLTKEESSSGDETETVETSGLVPKSTNSRAYNPESPNSDSHSSSEPYSLNSLAFYRCKHCTKCYSTNKSLQRHMLIHDEKKFVCNVCNMKFFRPDRLKSHRDRYGHDEDKECMEPQKPPDDKSAIKLINSWIREQLDSDNEGKGFPCDVCGKSYVTKKSLQKHRANIHASKTNICTVCGEDCKCLEKSNNDDNKIDKSKPYSCDECDKSFEKESKLKTHLRIHERAKEQQDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHSFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSNYQNVSSQNTQNYVQLQTGVNVSPIVAPIIPMLSASSNLNNVNNTLGSHGQKSYIENMQRMSAHVAAAAAVGNPGLHMHSNSDVSEMASAVRSFTITQVFHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00174500; iTF_00175243;
- 90% Identity
- iTF_00175243;
- 80% Identity
- -