Basic Information

Insect: Athalia rosae
Gene Symbol: -
Assembly: GCA_000344095.2
Location: NW:589066-593556[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.1 75 3.4 0.3 2 23 441 462 440 462 0.93

2 16 3.6 2.3e+02 1.8 0.3 1 23 465 488 465 488 0.87

3 16 0.8 52 3.8 0.3 2 15 523 536 522 542 0.79

4 16 1.3e-07 8.5e-06 25.2 1.4 1 23 551 573 551 573 0.98

5 16 4.5e-05 0.0029 17.2 7.2 1 23 580 602 580 603 0.96

6 16 0.0017 0.11 12.3 0.1 1 23 615 638 615 638 0.94

7 16 0.00046 0.03 14.0 3.9 1 23 665 688 665 688 0.98

8 16 0.00034 0.022 14.5 2.0 1 23 694 716 694 716 0.97

9 16 0.0058 0.38 10.6 4.7 1 23 731 753 731 753 0.95

10 16 0.3 20 5.2 0.7 1 23 759 782 759 782 0.94

11 16 2.1e-05 0.0014 18.2 5.0 1 23 796 818 796 818 0.98

12 16 9e-07 5.9e-05 22.6 0.6 1 23 824 846 824 846 0.99

13 16 0.0028 0.19 11.6 0.6 1 23 852 874 852 874 0.97

14 16 0.0025 0.16 11.8 4.7 1 23 880 902 880 902 0.99

15 16 2.3e-07 1.5e-05 24.4 1.2 1 23 908 930 908 930 0.99

16 16 2.3e-05 0.0015 18.1 1.2 1 23 936 959 936 959 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.1	75	3.4	0.3	2	23	441	462	440	462	0.93
2	16	3.6	2.3e+02	1.8	0.3	1	23	465	488	465	488	0.87
3	16	0.8	52	3.8	0.3	2	15	523	536	522	542	0.79
4	16	1.3e-07	8.5e-06	25.2	1.4	1	23	551	573	551	573	0.98
5	16	4.5e-05	0.0029	17.2	7.2	1	23	580	602	580	603	0.96
6	16	0.0017	0.11	12.3	0.1	1	23	615	638	615	638	0.94
7	16	0.00046	0.03	14.0	3.9	1	23	665	688	665	688	0.98
8	16	0.00034	0.022	14.5	2.0	1	23	694	716	694	716	0.97
9	16	0.0058	0.38	10.6	4.7	1	23	731	753	731	753	0.95
10	16	0.3	20	5.2	0.7	1	23	759	782	759	782	0.94
11	16	2.1e-05	0.0014	18.2	5.0	1	23	796	818	796	818	0.98
12	16	9e-07	5.9e-05	22.6	0.6	1	23	824	846	824	846	0.99
13	16	0.0028	0.19	11.6	0.6	1	23	852	874	852	874	0.97
14	16	0.0025	0.16	11.8	4.7	1	23	880	902	880	902	0.99
15	16	2.3e-07	1.5e-05	24.4	1.2	1	23	908	930	908	930	0.99
16	16	2.3e-05	0.0015	18.1	1.2	1	23	936	959	936	959	0.96

Sequence Information

Coding Sequence: ATGCTCAAGTTGGTTTTGCAGACCCAAGAGGGTCAGCAGATAGAAGTAACAGTGAGTGCGGATGATACATTCACAGATTTACAAAGACAGTTTGAGAGTCCAGAGAATCCAAACCTACCCGAACTCTTGAAACATTTAATAACGAATGGAGAATATGTAGATGAAAGTATGAGGGTATTTGATTATGTGACGAATAGTAGCTCATCAGAATGGCTAGCAGACGAagctataaaaaatataaatacttCAGAAACGGTCGATACTTTACAAACAATTGTAGACCATACATCAATAAAAGGATGTTGCGTGGATGGCTGTTCTAACACGGAATTGACCGTACCAAGTAAAGCTTTCTTTCCTCTACCAACTGATAAAGATAgacTATCTTCGTGGTTAATTGGTTTAGGGAAATCAGAGCTTGTTGATGTTGAAGCAGGATCTAAGACCGAAGAGAATCATTTTGTTTGTGCCGATCATTTTCCCCctcatcaatttttaaaggGGACCAATCAGGTTCTAAAGCGACGTGCGTGTCCCTCATTGAAACCGTTCACTTCAGAAGAATCAACAAATACATTAGCAACTCGGTCAGACTGCCCTCCTAAAATAGTATTTGTACAGTCTGAAACAATTGaGACTGAGACACCTTTACCTcaaatcaaagaagaaaatgaagagccAAATCACCTCGGGGCAGTGGATTACAATATGCTGGAATGGATCAATGATTTCAAGGAAACAACTCATCCAGGTGTATTATGCCGTTTGTGTGGAAAACCTACGTTTAGTCCTGTCTACCTCTACTCTGAGCTAAATAGCAGTAACGAATGCTCTTTagcggataaaataaatttatgtttACCCATCACGGTGAATGCCAAAGATCCCCTGCCGAAACAAGTGTGTACAGAATGTTGGGAAAAGCTTGAAATGTGTCATGAACTTGCCACTAAGTGTCTTGAAACAGAAGATAGATTAAAAGAAATGTTTGAGTTGAAAGAATTCAACGTGAAAGATACCGACCCACAAGAGTGTCCATTATGTGTAACTGGAAGCATGCAACTAGTGACCAAAAGTGGAATTTATCGCAAGGACAAAACTGAGATTATTTCTGAGAGTCTGAGCAATTCCAGTGCTCGGACCAGACAAGTTTCGCCTTtgagaaatatgaataataaattagggAGTTTGAGTTCGACAGTGGATAAAGAGCCTCTTCAGGAAATACATGCTAATCTTTCTACCGCGGTTGTAGGAAAATCATTTCAAGATGAAAAGATATCAACGGATTCTCCATCGTATATATCACAAGGTGAACTATCGTGCTCTCTTTGTGATCAAAAAGAGACTAGCATTGAGAGTTTAACCCAACACGCAAAAGAACATGACGGCTATCCATGTACTATATGTGAAGATGTGACCTTTACAACGATTAACGAACAGCAACTACACTTTTTGAAACACGGCGTTAATGATGGATACTGCGAAATGTGTTCAATAGAATGGAATAACGTCAAGGATGCTGCAGAACACATCAAAATTTGTAAGCCCGAAGTTTGCAGCATTGTATGTGCTGATTGTGGTGCAAAATTCTCTGATTTTGAGTCGGGAGAGAATCATTTGTGTCCAACATCCGAACTTGAAGAATGGTTCGAGTGCGATCAATGTGGGAAGAAATTCAGACAAAAGATTAGCTTGAACACACATATGAAAGTCCACGAAAAACGCGCGATATATTATAAGTGTTCATTCTGCAACAAACAATTTAACCGAAAAGGAAGCCTTCACAAACATATTTCAATGCACCATGGGGATGCAGAGTCCACCACTGCCCCAACATGCTACAAATGCAGAAAGTGTGATGAGGCTTTTGCTACTGCAGCCCTTGCGGAGACTCATATATCAGAGAAGCACTTTAGCCAATTGATAATGACAGATACGAATTTTATCAGCGATGAATTCACTGCTGGAGAAATCAATTTAGCTCGTGTTTACATGTGTGAATATTGCGAACGGTGTTACACAATTCCTAGTTCTCTACATAGCCACAGACAAACAGAGCATTGTGAAAATACGAACTACCAATGTAAAGTTTGTAACAATTCCTTTGAGACTTACAAATCTTTGGTACGCCACAAGAGTTTGCATGCAAAAGAAAGTGAGCTTGAAGATTTGGGAATCAAGCAGTATTATCTTTGTACTTATTGTAACAAGACATTTTTACACTACACAACTTTGACTTCTCATATGTCACAGCATCAGCAACCGCTACCATATTTATGTCGACTTTGTAACTTCCAATTTGCCACATACGAAGAGGTATCTGATCACAAGAAAATAACACATCCTTATCAATCTGTGCTACACGAAAGGCCGAACAATTTATTCCATTGTCAGTATTGCAAAAAAAGCTTTTATCATGAAGTAGCGCTGATAAAACACATTCGTATGCACACTGGTGAAAAACCTTATAAATGTTCTGTTTGCGGTAAGGGATTCTCTCAAACATCTGGTTTATACACTCATCTTAAAGTTCATTCCGACTTGAGACCTTACAGTTGTCCCCAATGTCCTCAAACGTTCAAAATCAAAGGCGATAGAGACAATCACGTGAAAAAACATTCCGGAGATCGGCCTTACAAATGTGACTTCTGTAAAAAGGCATTTATGACGCAGCATGTTTATAGTCAGCACCGTAGGATACACACTGACGAACGTCCGTATAAATGTGACGTATGCGGTGAGGCATTTAGAAGATCGCACGTCTTGACTGTTCATATGAGACGACACACTGGAGAAAAACCTCATGTGTGTGATATATGTTCCAAGGCTTATAGACAACGTGGAGATTTATTAAAGCATAGAAAAATACAGCACGATGTTGGGCCCGATAGTTACAGCAATATAGCAAGTAATTCAAACACAGGTATTACCCGTTCTAGCGATGTCTCAAGTACTGAATCTACGAACGTGTTTCCACCCGTTTGA
Protein Sequence: MLKLVLQTQEGQQIEVTVSADDTFTDLQRQFESPENPNLPELLKHLITNGEYVDESMRVFDYVTNSSSSEWLADEAIKNINTSETVDTLQTIVDHTSIKGCCVDGCSNTELTVPSKAFFPLPTDKDRLSSWLIGLGKSELVDVEAGSKTEENHFVCADHFPPHQFLKGTNQVLKRRACPSLKPFTSEESTNTLATRSDCPPKIVFVQSETIETETPLPQIKEENEEPNHLGAVDYNMLEWINDFKETTHPGVLCRLCGKPTFSPVYLYSELNSSNECSLADKINLCLPITVNAKDPLPKQVCTECWEKLEMCHELATKCLETEDRLKEMFELKEFNVKDTDPQECPLCVTGSMQLVTKSGIYRKDKTEIISESLSNSSARTRQVSPLRNMNNKLGSLSSTVDKEPLQEIHANLSTAVVGKSFQDEKISTDSPSYISQGELSCSLCDQKETSIESLTQHAKEHDGYPCTICEDVTFTTINEQQLHFLKHGVNDGYCEMCSIEWNNVKDAAEHIKICKPEVCSIVCADCGAKFSDFESGENHLCPTSELEEWFECDQCGKKFRQKISLNTHMKVHEKRAIYYKCSFCNKQFNRKGSLHKHISMHHGDAESTTAPTCYKCRKCDEAFATAALAETHISEKHFSQLIMTDTNFISDEFTAGEINLARVYMCEYCERCYTIPSSLHSHRQTEHCENTNYQCKVCNNSFETYKSLVRHKSLHAKESELEDLGIKQYYLCTYCNKTFLHYTTLTSHMSQHQQPLPYLCRLCNFQFATYEEVSDHKKITHPYQSVLHERPNNLFHCQYCKKSFYHEVALIKHIRMHTGEKPYKCSVCGKGFSQTSGLYTHLKVHSDLRPYSCPQCPQTFKIKGDRDNHVKKHSGDRPYKCDFCKKAFMTQHVYSQHRRIHTDERPYKCDVCGEAFRRSHVLTVHMRRHTGEKPHVCDICSKAYRQRGDLLKHRKIQHDVGPDSYSNIASNSNTGITRSSDVSSTESTNVFPPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00175249; iTF_00174497;
90% Identity: iTF_00175249; iTF_00174497;
80% Identity: -