Basic Information

Insect: Athalia rosae
Gene Symbol: -
Assembly: GCA_000344095.2
Location: NW:538090-544257[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00017 0.011 15.4 3.9 1 23 229 251 229 251 0.98

2 11 0.0013 0.088 12.6 11.5 1 23 257 279 257 279 0.96

3 11 4e-05 0.0026 17.4 6.6 1 23 285 307 285 307 0.99

4 11 0.00028 0.018 14.7 1.6 1 23 313 335 313 335 0.95

5 11 1.8e-06 0.00012 21.6 1.3 1 23 341 363 341 363 0.97

6 11 1.8e-05 0.0012 18.5 1.1 1 23 369 391 369 391 0.97

7 11 5.3e-05 0.0035 17.0 1.6 1 23 396 418 396 418 0.97

8 11 1.6e-05 0.001 18.6 0.0 1 23 424 446 424 446 0.96

9 11 2.8e-05 0.0018 17.9 0.2 2 23 458 479 457 479 0.96

10 11 3.6e-06 0.00023 20.7 2.5 3 23 550 570 548 570 0.96

11 11 1.7e-05 0.0011 18.5 4.6 1 23 580 602 580 602 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00017	0.011	15.4	3.9	1	23	229	251	229	251	0.98
2	11	0.0013	0.088	12.6	11.5	1	23	257	279	257	279	0.96
3	11	4e-05	0.0026	17.4	6.6	1	23	285	307	285	307	0.99
4	11	0.00028	0.018	14.7	1.6	1	23	313	335	313	335	0.95
5	11	1.8e-06	0.00012	21.6	1.3	1	23	341	363	341	363	0.97
6	11	1.8e-05	0.0012	18.5	1.1	1	23	369	391	369	391	0.97
7	11	5.3e-05	0.0035	17.0	1.6	1	23	396	418	396	418	0.97
8	11	1.6e-05	0.001	18.6	0.0	1	23	424	446	424	446	0.96
9	11	2.8e-05	0.0018	17.9	0.2	2	23	458	479	457	479	0.96
10	11	3.6e-06	0.00023	20.7	2.5	3	23	550	570	548	570	0.96
11	11	1.7e-05	0.0011	18.5	4.6	1	23	580	602	580	602	0.97

Sequence Information

Coding Sequence: ATGTGCACAACGCCTGGAAATGCAGGTGCCGGATTTGGTTACCCTTGGTCATTTGGTGGGCCAGGCACTGACGCTCGCGAAAATGCACAAAGCGATTTGAGTACCAACATTAGTTACGCTGTAAACAATAACCAGGATCAAGGCTCGAGTCAGAAAATTCAAGTTGACGTCAAACCGGCAAAGTTGGCCAACAGTGCTCACCGTCGCCCAGTATTCGCTATGAATGAGAGTTGTCAACAACCGCCGACTACTCACCACGGACATACAGGAGCTCACAATCAAACCCACGGTGTTCACGTTCGTACTAAGAAGCACCACGATGGCTTCTCAGTAACCTGCGATAAAGGTGGTTGTAACTGCGACGCTGCTCACCCTACTCCCCCGCCATCGCTCTTCTCTAACCCCTTGGTATTTAGCGCAGCTGACAAACACGCCATGAGTAAGCATTTCATGACTCCCCTCGGCCCACTCCAGCTAACCGCCGAAGAGTGCAACGAAATCCTAATGAAACGGGCTGTGGCTGCTTCGAATCAGGCAACCGCTAATAGTGTAGCAACCAGCCAGACAGACAGTACGGCTCACCTAGGTCATGTATTTACCCATGTGAATACCGTACAGATCGAGACTAAGGTCAAACAGCAGCAGGACATGGGCAGCCAGGTCCGTGTCCCAAAAGAACGCCCGTACTCGTGCTCCGAGTGCGGCAAGTCATTCCTACTGAAGCATCATCTGACTACCCATGCCAGAGTACATACGGGGGAGCGGCCTCACATCTGCCCCCACTGCGGCAAAAGCTTTGCTCACAAGCACTGTTTACATACTCACCTTTTGCTGCACAGTTCTGAGCGGCCGTACCAGTGTCGGGAGTGCAAGAAGTCCTTCACGCTGAAGCATCACCTCGTCACTCATACTCGAGTTCACACGAGGGAGAGGCCATTTGTATGCCAGGAGTGCGGCAGAGCATTTCCCCTGAAACGTCATTTAGTTACCCACAGCAAATTTCATTCTGGCGAACGACCATTCGTCTGCGAAGAATGCGGGGAATCGTTTTCACAGAAGGACCACCTCGTCATGCATTCGCGTTTCCACGGCAGCTTGCATCCCTTCGTTTGCCACGACTGCGGAGCCACCTTCCAGAGAAAGTTTGAGCTTGTTAACCATGGACGGTTACACGGTAGAGTGCCACATTCATGTACCGTTTGTGGCAAAGAGTTTCTACAGAAGCGTACTTTACTTGCTCACATGCGCCTACACACCGGGGAGACACCATTTGCCTGCACTGTCTGCGGCGAGGCCTTCCCCCGCAAAGCTGATCTGGTGGCACACTCCAAGATACACAACAATAATACAAGTCCCGATGAAAAGCCCTTAACTTGCAGgGAATGCGGATTGGACTTTTCCAATCGCGAGGCACTGACTCTGCATTTGAGGCTGCACTCCGGCGATCGAACTCTCGTCACGGACTTATGCGGCTTAGCTGCGGCTTTCCAACAAACTCCAGGTCATTTTCTAACGCCGAATACGACAGGGCCTCATCAGTATTTACAGATGAACGGCCCTATCGGAACCCCCGGGGTGAGCCACATGCACGGAGCCACGCAAACGTCTCCGCCTGTGGGCTCAGGACCCAAGCCCAAGCCCCATCTCTGTCCCGATTGCGGGCGTGGTTTCGCTCAGAAACACGGACTATCCCAACATCAGCGCCGCCACACGGACGGTAGCTGCCACATCCGGTCCCACGTTTGCGATAAATGCGGAAAGGCGTTCTTCCAAAAGAACCACTTGTTACTTCATCAACGTCAGCACATGGATCCTCCGCCAAGTCTGCTTCGTCAGCAGCAAAGACAGGCTGCTCAGGCAGCCGCTCAACAGGCCCAGCAACAACAGGtccaacagcagcagcaagccTGCACTGTGGACACTAAAGCAATACAGCTGCAAGCAATACAACAGCAAGTTCAACAGGTTCAGCAACAAGTCCAACAAGttcagcaacagcagcaacaacaacaacaacaacaacaacaacaacaacaacagcagcagcagcaacaacaacagcagcagcaacagcagcagcagcagcagcagcagcagccctGCACTGTCGACACGAAAGCAATACAGCTAAACGTCACCATGTGA
Protein Sequence: MCTTPGNAGAGFGYPWSFGGPGTDARENAQSDLSTNISYAVNNNQDQGSSQKIQVDVKPAKLANSAHRRPVFAMNESCQQPPTTHHGHTGAHNQTHGVHVRTKKHHDGFSVTCDKGGCNCDAAHPTPPPSLFSNPLVFSAADKHAMSKHFMTPLGPLQLTAEECNEILMKRAVAASNQATANSVATSQTDSTAHLGHVFTHVNTVQIETKVKQQQDMGSQVRVPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHICPHCGKSFAHKHCLHTHLLLHSSERPYQCRECKKSFTLKHHLVTHTRVHTRERPFVCQECGRAFPLKRHLVTHSKFHSGERPFVCEECGESFSQKDHLVMHSRFHGSLHPFVCHDCGATFQRKFELVNHGRLHGRVPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKADLVAHSKIHNNNTSPDEKPLTCRECGLDFSNREALTLHLRLHSGDRTLVTDLCGLAAAFQQTPGHFLTPNTTGPHQYLQMNGPIGTPGVSHMHGATQTSPPVGSGPKPKPHLCPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPSLLRQQQRQAAQAAAQQAQQQQVQQQQQACTVDTKAIQLQAIQQQVQQVQQQVQQVQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPCTVDTKAIQLNVTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01131010;
90% Identity: iTF_00174493;
80% Identity: -