Aros003966.1
Basic Information
- Insect
- Athalia rosae
- Gene Symbol
- -
- Assembly
- GCA_000344095.2
- Location
- NW:1209288-1212803[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.6 5.7e+02 0.6 0.4 3 16 20 33 19 35 0.85 2 12 7.7e-05 0.005 16.5 1.2 2 23 325 346 324 346 0.97 3 12 0.00031 0.02 14.6 1.2 1 23 354 377 354 377 0.94 4 12 4.7e-05 0.0031 17.2 3.4 2 23 425 446 424 446 0.97 5 12 2.4e-07 1.6e-05 24.4 0.8 2 23 494 515 493 515 0.97 6 12 2e-05 0.0013 18.3 1.5 1 23 520 543 520 543 0.95 7 12 1.9e-06 0.00013 21.5 0.4 1 23 581 603 581 603 0.98 8 12 6e-07 3.9e-05 23.1 0.9 1 23 613 635 613 635 0.96 9 12 1.7e-06 0.00011 21.7 1.2 1 23 641 663 641 663 0.99 10 12 8.5e-06 0.00056 19.5 0.2 1 23 669 691 669 691 0.98 11 12 0.0015 0.096 12.5 4.2 1 23 697 719 697 719 0.98 12 12 0.00033 0.022 14.5 0.3 1 21 725 745 725 746 0.94
Sequence Information
- Coding Sequence
- atggaagtggaaaaaattgaagtcgctgaaaatatttcccaaGTTCAGTCACCTTCTTGCCAGGAGTGTCGTATTTGTCTTAAGAATGCCGATGAGTTTTGGGAATTGTTTCAAAACGATCACgatataccaaaaaaaatcatggcaTTTGCTGCCATACAGGTAGAACATGGTGATGGCTTACCAAGTGTGATTTGTCTCTCCTGTCGGCAGCTCTTAGATATGTCTTATGATTTCAAATGCCAAGTTGAAAAGTCTGATGCTACTCTgcgtaaaatattattgacgAGGCTAACAATAACTGAAGATGCTGTGAGAGAATCCTCACGTTCTGTCAACGACGTCATCACGGAGGCTATTGTTGATGAAATTCCCAATAGTGATATCAAGGATTTTGAGATGCaggaagaaacaaaactgCAAACTCTTCATGAGTTAAAATGTGTAATTTTGGATGACTATGACGATAAAGAAGGTATGGCGACTTATAGAATTAACGAGGGCTGTATTAGGCCCAAACATTTGCCTGAGGAAGAAGCGGAGAAGGCTCAAAGGATCGAACCAATTGAGAAATGTGTAGAAATAGACAAAAGTTTAACTGATTCTGGAATTGCTACAACTTTGGAAAATGTTGAGGTATTGCTTGAAGATCAAGGAGTTACTGTAGGTAAGTTGATTGATGCAACAGAGCACACGGAATGCAAAACTGCCAAACTGGAAAACCTTGGAATACCCGAAGAAAGTGATTTGTCTGATCAAGAGGATGATTCTCAAgctaatgaaattgaattttgtgATGAAGATCTTAAGTTtgcgttaaaaaataattcgttatGTGATGTCCGTGATATCGAAGCTGATGGAGTTTCTTCTGAATCTGATAAGTTGAAGGCTACCGACTGTGAAATCCCTAGTGAAGAAATCAATGACAGCGACGAAGAGAAACCCTTGATTTCACGGACAAATCGGCAAAAATGTCCTCATTGTATCAAGAGCTTTGCTACCAATCTGGCCTTGCAGCGTCACATGACTGTTCATAAACACAAAACTAAACTTCGCTATGTCTGCTACTTGTGTGACAAACAATTCTCTAATgtgacaaaattgaaaaatcatgtaTCAAACAACCacgattctttgaaaaatgacaacAGGGTTGACATGGACAATAACCATGGCACTTCTGAAACTGATAGAAAAGTGGAAACATTGGATAAAGATAACGTTGGATTAAGTGACAAGCAAagagtgatgaaaaaaagttgcaaATTGAAATGCAAAGTCTGCACCAAGCAGTTCACTTATCAGAAATCATTCCTTACCCACATTAAAACCCACCCTGAATATGATAGATCAGAAAGTTCAGAAAATCATATTCAGCAATTGCAAACTATTGATGAATCTTTAGAACAACAAGATGAGTTGActgattcaaaaataaatgaatctgatgatgatgatttacCCTTGGAAGGTCTTCAATGTACCCAGTGTGGCAAACTCTTTGCAACAAAAGCAAATCTGAAGAGACATATTTCTACCCATAGTGGACTGAGATTCAATTGTTCAACTtgtggaaaagaattttcaagatTAGATAAACTCAAAGATCACGAACAGTCAAAACACAAAGAAGAAATCTTTGGTCCTTCGGATGATGAGGATGACGACACTGATAATGAGAACAACAAGCCTACCGATGGTACTGGATCCAGAAGGAAGGAAAAGAAATGCAGACCTCATCAGTGTGCTATGTGTCCCAAGTCCTTTGCGCAGCCTCAATCATTGGCTAACCATATGGAACGGCATAAGCGTGTGAAAGAACCTCAAAAACGTTTCCTTTGTGAAGTATGCAGCAAATGTTTTGCCCAAAGTGGATCACTAGTAGCCCATATGCGAACTCACACAGGGGTCAAGCCCTACGTATGTAATGTATGCAGTAGAGCATTTACTAAAAGTACATATTTGCAGTTACATCTGCGCACACACAGTGGTGAAAAACCATACATATGTCAATATTGCAGTAGAGCATTTGCCAGAGCTAATACGCTGGCTAGACATATAACTATGCACACAGGGGAGGCAAAATACCATTGTCAAATATGCATGAAATCATTTAGGCGATTAACTTCTCTGAACGAACATACTTATACTCATACAGGGCAGAGGCCATATGCATGCAAGATTTGTTCGAAGAGATATAATAACGCTGGTTCTTTGTATGCTCAtacaaaaaaatgtcgagCACAGCAGTTGTCGGGTTCTGCTTCAACTTATACAGTTTCAGTTGATAATGCTAATCACAATGACACTGGGACTGTGCCGCAAATGTTGATTTATACCCAGAGAAAAATTGCAGTCAACGAGCCACAAACCACGCAAGGTCCAACTCCACAGTTTATGATAACGACTGTTCAGAGTCAAAAATCGTTGCCAACCCATATCGCCCAGGCCTTTGCAGTAGGGGATCCTCCATGCTATTCGATCGATGGAAAGTCTTTCAAGAATCCATATTACACAATCTATCCCAATATGTAA
- Protein Sequence
- MEVEKIEVAENISQVQSPSCQECRICLKNADEFWELFQNDHDIPKKIMAFAAIQVEHGDGLPSVICLSCRQLLDMSYDFKCQVEKSDATLRKILLTRLTITEDAVRESSRSVNDVITEAIVDEIPNSDIKDFEMQEETKLQTLHELKCVILDDYDDKEGMATYRINEGCIRPKHLPEEEAEKAQRIEPIEKCVEIDKSLTDSGIATTLENVEVLLEDQGVTVGKLIDATEHTECKTAKLENLGIPEESDLSDQEDDSQANEIEFCDEDLKFALKNNSLCDVRDIEADGVSSESDKLKATDCEIPSEEINDSDEEKPLISRTNRQKCPHCIKSFATNLALQRHMTVHKHKTKLRYVCYLCDKQFSNVTKLKNHVSNNHDSLKNDNRVDMDNNHGTSETDRKVETLDKDNVGLSDKQRVMKKSCKLKCKVCTKQFTYQKSFLTHIKTHPEYDRSESSENHIQQLQTIDESLEQQDELTDSKINESDDDDLPLEGLQCTQCGKLFATKANLKRHISTHSGLRFNCSTCGKEFSRLDKLKDHEQSKHKEEIFGPSDDEDDDTDNENNKPTDGTGSRRKEKKCRPHQCAMCPKSFAQPQSLANHMERHKRVKEPQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICMKSFRRLTSLNEHTYTHTGQRPYACKICSKRYNNAGSLYAHTKKCRAQQLSGSASTYTVSVDNANHNDTGTVPQMLIYTQRKIAVNEPQTTQGPTPQFMITTVQSQKSLPTHIAQAFAVGDPPCYSIDGKSFKNPYYTIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00175234;
- 90% Identity
- iTF_00174482;
- 80% Identity
- -