Aros003031.1
Basic Information
- Insect
- Athalia rosae
- Gene Symbol
- -
- Assembly
- GCA_000344095.2
- Location
- NW:931813-934669[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.9e-06 0.00026 20.6 1.9 1 23 99 121 99 121 0.98 2 18 0.00056 0.037 13.8 2.6 1 23 123 146 123 146 0.90 3 18 0.00059 0.038 13.7 2.0 1 23 151 174 151 174 0.95 4 18 2.2e-05 0.0014 18.2 3.0 1 23 180 203 180 203 0.96 5 18 0.0073 0.48 10.3 1.4 2 23 210 232 209 233 0.95 6 18 0.00019 0.013 15.2 1.5 1 23 237 259 237 259 0.97 7 18 0.00017 0.011 15.4 0.2 2 23 266 286 265 286 0.96 8 18 1e-06 6.6e-05 22.4 0.2 1 23 292 314 292 314 0.98 9 18 0.00039 0.026 14.3 0.7 1 23 320 342 320 342 0.98 10 18 0.00017 0.011 15.4 2.9 2 23 459 480 458 480 0.96 11 18 3.5e-05 0.0023 17.6 2.1 1 23 482 505 482 505 0.97 12 18 0.16 11 6.0 4.4 1 23 510 533 510 533 0.92 13 18 2.1e-05 0.0014 18.2 2.1 1 23 539 562 539 562 0.96 14 18 0.0013 0.087 12.6 3.6 2 23 569 591 568 591 0.95 15 18 0.00017 0.011 15.4 0.6 1 23 596 618 596 618 0.98 16 18 3.5e-05 0.0023 17.6 0.4 2 23 625 646 624 646 0.97 17 18 2.1e-05 0.0014 18.2 2.5 1 23 652 674 652 674 0.97 18 18 1.1e-07 7e-06 25.5 0.6 1 23 680 702 680 702 0.98
Sequence Information
- Coding Sequence
- ATGACGATTACTCAACTATTAGCGCTGATGaAGCATAACGCGTGCATAATTGGGGCACCTCCCTCTGATCCACTAAGCATACCTTTGGATGAATCAAGAATCCTGAGTGATGAAAAAGTTGTAAAAGTCGAATACCCTCTGGATTACATGATATGGCCTAAGGAAGGTGATGAAGATGTCGAGGTAAAGAATGAGATGACAGTATCAGATTCGGAGTGTAATAGTGTGGCAAAGGCAGCTATTCAGCCAAGAAGAATCGAATCCtctaaaaaatcatcgagtaTAAACAGAACTTTTGAATGTAATTCATGCCAGCGgacgttttcgaaaaaaagcaacCTTGCTGAGCACCTCAAACAGCATAGGCACAAGTGTACAGAGTGTGGGAAAACGTTTAGCATGAAACGATACCTTGATGGACactttgataaaattcacAAATTCCAGTTGTATAAGTGTAACTTATGCGACTACAAGAGTAACAATAAGGGGACCCTAAAAAACCATTTCATACGACTTCAtacgaatgaatttaatttctcatGCGACACATGTGGTAAGCAGTTCAAAATAAAGAAGGCTCTGAATCACCACATGAAGCAGGATCACAGTGGAAACCCCCCTATAGTTTGCGATATCTGCGGAAACTTCAGCAAAAATATTCATGCTCTTAAAGCGCACATAAAGTATCGTCATCATAAACCTGCATTCGAATGCCATATCTGCAAGCGAGGAATGACGACGCAAGAAAATTTGAGACAACACTTATCGTGGCATGAGAACATAGAGAAGGTCGTCTGTCCAACTTGTGGAAAGAAATTTCGGGGACGTGATCTCGACTCCCATATGCGGGTACACACTGGAGTGAAACCATTCTCATGCCCTGTTTGCGGAAAGTCATTCAGGCGTCAGACTGCACAGGAACAACACATCCTCATTCATACGGGGAAGCGACCTTACGTGTGCGATGTATGTGGACAAGCTTTTGCACAGAAACCTGGCCTCACTTGCCACCGAAAAAGACACCCTGGACCTTTACCTCCGCTTCCAGCTGTCTCCATTAAAACTATCGTAACTCAGTTCAAGATGGAATATGCTGGCAAAAGACATACCGACGACGaaaAAAAATCGCTGAAAAGTGATGTGACGATAGCATACGAAAGTTTTCATCATTGGCTGAAgcgattaCTTCTTCAATTGGACCCCTTGAGCATCGCTGTATCTCGAAGGAGGACCTCAACTCATAAACAACCGTTGCAAATAGAATGCGTGTCGGAAATGATAGCCAGACttgttggaataaaaaaactgaaaagaaagaTTGCTAataatcggttgaaaaaagcTACTACCTCAAACACAGGGCAGATGTTGCACTGTGATACGTGCGAAAAGACGTATACCAGCAAAGATAAATTGATATCGCACTTGAAGCAGCATACATTCAAGTGCGAGACATGTGCAAAGACCTACGTCCATAAACGAGAGCTGAAAATTCATATGGAGAAGATTCATGGTCCACTAATGTACGAGTGCACGGTATGTgattataaaagtaataagAAATGCACGCTGAGAGATCACTTCGTCAGAAAGCACACCGACAACTATCAATTCTCGTGCAAATTTTGCAACAAACCATTTAAGATTCAAAACAATCTGAAGCAGCATATCAACCAAATGCACAGCGGTAATCCTCCGATAGTCTGCGATGTTTGCGGTCACGAGTGCAAGAATTTACACTCTCTGAAGTCTCACATAAAATACATCCACGAGAAGCCGGACTACGTTTGTAAAATCTGTAAACGACGTCTGATGACGCAAAAGGGACTCGAGCAGCATATCAAATGgcacgaaacgaaagaaagagtGGTATGCGAACAGTGCGGAAAAATGTTTCATATTCCTTACGATCTTGAAATTCACAAGCGTACTCACACTGGAGTGAAACCACATTCATGTACCGTTTGCGCGAAATCTTTTGCCAGAAGAAACACGCTTAGACAGCATTTGCTGACTCATACGGGAAAACGACCTTATGTCTGTGATATTTGCGGCAAGACTTTTACACAGAAGCCGGGGCTCACAAGCCACAGAAAATCCCATCCCGGATCTCATCCACCACTTCCTAGCGTTTACATCGACAGCATATTGAAGGACTATGCTTTGGAGACAAAAATTGCGAGGAAAGAAGCTCTGAGTTGA
- Protein Sequence
- MTITQLLALMKHNACIIGAPPSDPLSIPLDESRILSDEKVVKVEYPLDYMIWPKEGDEDVEVKNEMTVSDSECNSVAKAAIQPRRIESSKKSSSINRTFECNSCQRTFSKKSNLAEHLKQHRHKCTECGKTFSMKRYLDGHFDKIHKFQLYKCNLCDYKSNNKGTLKNHFIRLHTNEFNFSCDTCGKQFKIKKALNHHMKQDHSGNPPIVCDICGNFSKNIHALKAHIKYRHHKPAFECHICKRGMTTQENLRQHLSWHENIEKVVCPTCGKKFRGRDLDSHMRVHTGVKPFSCPVCGKSFRRQTAQEQHILIHTGKRPYVCDVCGQAFAQKPGLTCHRKRHPGPLPPLPAVSIKTIVTQFKMEYAGKRHTDDEKKSLKSDVTIAYESFHHWLKRLLLQLDPLSIAVSRRRTSTHKQPLQIECVSEMIARLVGIKKLKRKIANNRLKKATTSNTGQMLHCDTCEKTYTSKDKLISHLKQHTFKCETCAKTYVHKRELKIHMEKIHGPLMYECTVCDYKSNKKCTLRDHFVRKHTDNYQFSCKFCNKPFKIQNNLKQHINQMHSGNPPIVCDVCGHECKNLHSLKSHIKYIHEKPDYVCKICKRRLMTQKGLEQHIKWHETKERVVCEQCGKMFHIPYDLEIHKRTHTGVKPHSCTVCAKSFARRNTLRQHLLTHTGKRPYVCDICGKTFTQKPGLTSHRKSHPGSHPPLPSVYIDSILKDYALETKIARKEALS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -