Aros003083.1
Basic Information
- Insect
- Athalia rosae
- Gene Symbol
- -
- Assembly
- GCA_000344095.2
- Location
- NW:898173-921197[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0056 0.37 10.6 2.0 1 23 340 362 340 362 0.95 2 21 5.6e-07 3.7e-05 23.2 2.4 2 23 369 390 369 390 0.98 3 21 3.3e-06 0.00022 20.8 5.4 1 23 419 441 419 441 0.97 4 21 0.00023 0.015 15.0 4.4 2 23 447 468 446 468 0.97 5 21 0.015 1 9.2 0.0 1 23 473 495 473 495 0.98 6 21 1.9e-06 0.00012 21.6 0.9 1 23 503 525 503 525 0.98 7 21 4.1 2.7e+02 1.6 5.8 2 23 532 554 531 554 0.92 8 21 0.00025 0.017 14.9 0.3 3 23 567 587 565 587 0.96 9 21 1.5e-06 9.9e-05 21.9 2.6 1 23 593 615 593 615 0.96 10 21 4e-08 2.6e-06 26.8 0.2 1 23 621 643 621 643 0.98 11 21 2.9e-07 1.9e-05 24.1 0.9 1 23 649 671 649 671 0.98 12 21 0.0012 0.077 12.8 1.7 1 21 677 697 677 698 0.95 13 21 3.7e-05 0.0024 17.5 1.6 3 23 954 974 952 974 0.97 14 21 0.0099 0.65 9.8 1.0 2 20 981 999 980 1002 0.94 15 21 0.00045 0.03 14.1 1.7 1 23 1008 1031 1008 1031 0.94 16 21 1.9e-06 0.00012 21.5 0.2 1 23 1038 1060 1038 1060 0.98 17 21 4.5e-06 0.00029 20.4 1.0 1 23 1067 1089 1067 1089 0.98 18 21 0.00021 0.014 15.1 0.8 1 23 1096 1118 1096 1118 0.98 19 21 0.00078 0.051 13.3 5.0 1 23 1122 1145 1122 1145 0.97 20 21 5.2e-06 0.00034 20.2 0.3 3 23 1153 1173 1151 1173 0.97 21 21 2.8e-07 1.8e-05 24.2 1.0 1 23 1179 1201 1179 1201 0.98
Sequence Information
- Coding Sequence
- ATGTCGTCACTCGACTACCTGGATCTGTGCAGATTGTGTTTAGTCAAAGACGGCGTTTCCGTCCCTATATTCGAGGGTGAAGGCGACGTAAGACAGATATTTTTGAAGATCGCCGCGTGCCTGCCGGTCAAGGTTGCACGAGAAGACAAGTTACCTAAGAAGATATGCGATAATTGCGTTTACAAGGTGGAATTGCTCTATCAATTTTGGAATACTACCGCAAACGCAGAAAAGCAGCTACTGCAATGGCTCGGAGAAGTTGGACTCGAAGACAAGCAGGGATATGTCACGGGAGTTCTCAATACGAGTACAATGAAGGAGGAAGATGACGCTTCATCAGTCATCCAGAGTTCCATTGCAACTACAACTCCACAGTCTGGTATTGGCATAGGAGTAGTTGACAACATCGGACTCGGAATGCCATTTTCTGGCACAACCCACCAGCAGCAGCTACCACCTACTATACCAATAAACCAACCTATTCACCAGGCTCTTCCGGGCCCGAGTAACCAACCAGCACCTGACCAACTTTCACAAACGCAGGGTAATGCCACAACACGCCCACaagatgaagaggaagaaagcAGTGAAGAAGAAGACAACTCTGACGACGACTGCGATGCTGACGATGGCTTACCGGTGAAAGAGGAGAGCGAAGAAGACCTTGGAAATAGCAGAAATATCGAGCCGACTACATTTGTCAATGTTTCCCTAGCCTGTGATGAGGCTGGTCCTTCTGGCTTACAGCAACAGAAAAACACTACAGAGATACCTGAACTGTCCATGCCACAGACGTTGAACGAAAGCGATGCTAAGTCTGGATTTATGCAACTACCCTTGTCCGAGGAATATTATCGAATTCTCATGCTATCGAAGCTCGACCTGGTCAAGAACAAGCAATCGGACGAAGGAGCTCAGAAAGTTGGAACCGCTGACCAAACATCGAGCGATGTAAACCATCCTATAAaggaagaattgaaagatgatgatgatgatgaagacGATATGCCCCTAGCTTACCACTGCAAGACCTGTgctgtatttttcaaaactaaagACCTGCTGAACAATCATGAAATCGAGCACAAgggtaaaagaaagaatacTTGCAACCAGTGTGGGAGAGTTTTTCGAACTTACATTAATCTTAGAAAACATATGAAGAAGCATgccggaaataaaaataagaacgagGGTAGGCCGGTGGTGAATGTTGACCTGGATGTGAAATCAGAGAAGAGCGGGTATGCTGAGTTTGCTTGCAAAACTTGCAATAAAGTATTCCGTCACAAAAGCAATTATCAAAAACATTTGCTCAGGCATACTGCGGGTGACCTTACCTGCAATCATTGTCCCAAAAAGTTTCGTCTGTTTCGAGATCTCACTCGACATGAAAAGACACATTTTTATCCAAGCTACATGTGCAAAGAGTGTGATTACGAAACAACGGTCGTCGCAGCTCTTGGCATCCACATGCTGAGACATACAAACAAATCCGATCTACCTTTTAAGTGCAACGACTGCGATAAAAGGTTTCGTAAAGCTATCGAACTCCAAGAACACTACAATATTCATTCTGGGGAAAAGCCATGCATTTGCACCATTTGCGGCAGCGCCTTTCACCTGAGGAGACAGTTATCCGCCCACTGCAGACGAACACATCCAGAAATGAAGGCGAGTAAAGTGACGAGCACAGCCTGTGACATTTGCGGACGGGTATTAGCAACGAAGCGCTCATTATTTCGTCATAAAGAAAGTCACAATCCTACGAAATTGTACTTATGCGATTACTGTGGAAAGAGTTTGAGCAGCTCGGAGCACCTAAAGAAGCACCGGAGGATTCATACGGGGGAAAAGCCCTATGTTTGCGATATTTGTGGCAAAGGATTTACGGACTCTGAAAACTTGCGGATGCACAGACGGATTCATACCGGAGAAAAGCCCTACAAATGCGATCAGTGTCCCAAGGCCTTTTCGCAGAGATCGACACTCACTATTCATCGGCGTGGTCACACGGGCGAACGACCGTATATATGCCAAATTTGTCATCGAGGATTCTCCTGCCAGGGGAATCTTACCGCACACCAAAAATCTACGTATGTTGATTATCGTACCGTCACCTTGATTTGTGCTAGAGTACCTTCTTTGAGTTTGATGCCAACTGGAAGACTTCCTCGCGACATCCACGGATTTGATTGGGAAGGTGAAAACTCTGAGGGTTCGTCTGCACTAGATGCCTTGCGTATTCCAATCCAAACAGATCCCCAAATACATGTTGAAGGCCCGCAAAAACGTAAAAGGGGCATGATTTGGTGCATCAAAGAGATGGATCGCCTAATGAAAAGTCCCACCCCAACATCACGTACCAGCCTTGAAAAAGGAAGTAGGAGTAAGGTTGAAAATAGAACACACGAAACATTTACTCCAATCAAAATCTTGAAAATCAGCAAGAAGAAGAGTGGAGAAATtgtgataaaagaaaaaaatttggtcaaAAAGCTGCGTACCAAATCACCCACAGCTTGTGTGGAGATTAAAAGTACAAAAGTAAAAGACAATGGTGGCAAGAAGAAGAGTGAAGAAATtgtggtgaaagaaaaaaatttggtcaaGAAGCTGAGTACCAAATCACCTACAGCTCGTGTGGAGATTAAAAGTACAAAAGTAAAAGACAATGATGGCAAGAAGAAGAGTAAAGAAATTGTGGTGAAAGAAACAAATGTGGTTAAGAAGCTGTGTACCAAATCACCCACAGTTCATGTGGAGATTGAAAGTACAAAAGTAAAAGATGATGGTACTGATTCTGAAACCGAGCCAACAGCTGTAGAACTTTTCGGCGATGAGCCTAGTAATACTTTCTGCACATCATGCGACAGGGATTTCATAAATAGAAGTGACTTCTGGAGGCACATGAGAAATCACAACACTCGAAGGCCCTGGAAATGTCCGCAGTGTCCTGCAAGGTCCAGATCTAAACAGGATCTTGAGAGACATCTTGCCTGTCACGATGACCAGATATTCTATTCCTGTGATATTTGCGATGTACGTTACAAATCTCAACAAGCGTTAAAAAACCACCATGTAAGACAACATGATGACAGCGTGGGTCAATTTAGTTGCGAAAACTGTGGTAAAACGTTTAAATTAAAAGCAGATCTTGGCGCGCATATAAGGGTTCACCGTATTGATGGCACAGGATTCGTCTGTGAGGTTTGTGGCCAATCATTTAATCGCCGAGGATCACTAGTGGCCCATAAACGTCACCACAGAGTTAAAGTTTCTAATTATCCCTGCCCAAAATGCAGGCTTAAATTTACTTCAGATCTGAACCTTCAGAATCATTTACTTAAACATAGAGAAGGCTTTAAGTGTGAACAATGTAATAAAGAGTTCAACGAGAGGTCACGTCTCCAGTATCATATGCACAGGAGGCATGGTAATCCCGAACCCCAAATATGCTCTATATGTGGAAAGCCGTTCAAAAGCATCAATAGCCTCCGAACTCACATCCTAACACATACTGGAGAACGACCCTACAAATGCGATGTTTGCGGAGAATCTTTCACTCAAAGATCAAGTATGATGCGACATAGACGGGGACACCCTGGGAGAttttcccctcccccacccATCCACATCACAAAAATCATCCAAGATATCAAAGAAAAGGCTCATGCTTCAAATTAG
- Protein Sequence
- MSSLDYLDLCRLCLVKDGVSVPIFEGEGDVRQIFLKIAACLPVKVAREDKLPKKICDNCVYKVELLYQFWNTTANAEKQLLQWLGEVGLEDKQGYVTGVLNTSTMKEEDDASSVIQSSIATTTPQSGIGIGVVDNIGLGMPFSGTTHQQQLPPTIPINQPIHQALPGPSNQPAPDQLSQTQGNATTRPQDEEEESSEEEDNSDDDCDADDGLPVKEESEEDLGNSRNIEPTTFVNVSLACDEAGPSGLQQQKNTTEIPELSMPQTLNESDAKSGFMQLPLSEEYYRILMLSKLDLVKNKQSDEGAQKVGTADQTSSDVNHPIKEELKDDDDDEDDMPLAYHCKTCAVFFKTKDLLNNHEIEHKGKRKNTCNQCGRVFRTYINLRKHMKKHAGNKNKNEGRPVVNVDLDVKSEKSGYAEFACKTCNKVFRHKSNYQKHLLRHTAGDLTCNHCPKKFRLFRDLTRHEKTHFYPSYMCKECDYETTVVAALGIHMLRHTNKSDLPFKCNDCDKRFRKAIELQEHYNIHSGEKPCICTICGSAFHLRRQLSAHCRRTHPEMKASKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDYCGKSLSSSEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRIHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYICQICHRGFSCQGNLTAHQKSTYVDYRTVTLICARVPSLSLMPTGRLPRDIHGFDWEGENSEGSSALDALRIPIQTDPQIHVEGPQKRKRGMIWCIKEMDRLMKSPTPTSRTSLEKGSRSKVENRTHETFTPIKILKISKKKSGEIVIKEKNLVKKLRTKSPTACVEIKSTKVKDNGGKKKSEEIVVKEKNLVKKLSTKSPTARVEIKSTKVKDNDGKKKSKEIVVKETNVVKKLCTKSPTVHVEIESTKVKDDGTDSETEPTAVELFGDEPSNTFCTSCDRDFINRSDFWRHMRNHNTRRPWKCPQCPARSRSKQDLERHLACHDDQIFYSCDICDVRYKSQQALKNHHVRQHDDSVGQFSCENCGKTFKLKADLGAHIRVHRIDGTGFVCEVCGQSFNRRGSLVAHKRHHRVKVSNYPCPKCRLKFTSDLNLQNHLLKHREGFKCEQCNKEFNERSRLQYHMHRRHGNPEPQICSICGKPFKSINSLRTHILTHTGERPYKCDVCGESFTQRSSMMRHRRGHPGRFSPPPPIHITKIIQDIKEKAHASN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -