Acor009091.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Athalia cordata
Gene Symbol
ush
Assembly
GCA_963932425.1
Location
OZ010626.1:32870641-32874419[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.0055 0.45 11.1 0.0 3 20 270 287 268 289 0.92
2 8 4e-05 0.0034 17.8 1.3 1 23 322 344 322 344 0.98
3 8 0.092 7.7 7.2 1.6 3 20 379 396 378 398 0.93
4 8 0.014 1.1 9.8 4.4 2 21 604 623 603 624 0.94
5 8 0.023 1.9 9.1 0.0 3 20 651 668 649 670 0.92
6 8 0.04 3.3 8.4 0.0 2 23 709 730 708 730 0.95
7 8 0.0085 0.7 10.5 1.4 1 23 736 758 736 758 0.99
8 8 0.01 0.85 10.2 1.0 2 21 886 905 886 906 0.93

Sequence Information

Coding Sequence
ATGGTAGAGGGGAGAAATTCAACCAACATGCAGtttaagTTTGAGTTTAAGTATTGGAATACTTTTGTTACAGGGGAAGATGAAGAGTGGAGTGACTCGGAAAAGACCCCATCAGTAAGCAGTGGTGTCGAAGGCGGAGGATCTGGAGTGTCTAGTCCTGCGGCTGCACATCCTGGCGAGGAAGAATCCAGCCTTCCACCACCTCCACGATTAAATTCCGAAGAGACAAGACCTTGTTTGAGATTGCAGAACGTTCATAGCGCTGAAGATGGTAGAAAAAGGTTTTCGAACAGTAAAACAGAGGACATTGATAATATCACATGTGCGAGAAAATTCCAACAAGAAAGAGGCCCGACATTACGGACGCCCGGTGACCTGAGCCCGAaggataatataaaaattaaggatgacgacgatgatccTATTGAGTGTGTCAAAGTCGCTAATGACTCGACTAAAAGGACTTCCCCGTCATATAATTCAGCGAGAAGAAAAGATGCTCGTAGGACTATCGGGGATACGAGGAGGCTGGAAGAAGCATCTTCACCtattcaaacgaaaaaaatcaaacttgaAGACGACAACAACACTCCAAAATTGAGACTGAATGCTAGTCTGGCAACTGACCCTGCCCTACGAcctgccgctgttgctgctttAACTATCCAACAACAGGATAACAAGTCAAACACAAATTCAACCCCACCACCACTCCCGGCGGTTCTCCAGAACGccATAACATCCGGTCGTCTTTTTATTCTGCCAAACGATGGTAAAGAGGAAACAGGTAGACCTGTTCCCCTGATCTGTCCCCCCTGTGGTATCCGTTTTAGTTCGGCGAGTACTTTAGAAGCTCATAGAACGTTCTACTGCGCTCACCGTCCTCGAGCAGATGAGGAAAGTGcaaacgatgatgatgatcaggAGAAAACATCAGGATCTAAATTTGAAGTCCGTAAAGCATACGCTTGTCCTCACTGTTCTTACAGTGCGGACAAGAAAGTTTCGCTCAACAGGCACATGCGGATGCACGCAGCTTCTCCCGTAGCACCACCGTCGATTCCTCAGCCTCCATGCACGACACCTGGAAGTCCGTCGAACGGTTCGATTGTTAATGAAGAGGCTGAAAGATACTGCAGAAATTGTGACATAAGGTTTAGCTCTCTGAAAACTTACAGGGCTCATAAAACGCACTATTGCAGCACGAGGCACGTCGTTAAAGACCTTCTACAACCGACGTCACTGAAAGGTTCACCTCCAGCTAGTTCGAGTCCTGGAGATTCGCCACCCCCTCAACCTTGCCTTGCACTACCTACTAATCCTATTCTAATCGTACCATATTCCTTATTCAGAGGAGCAAGTGTACTAGCCGCTCCAGCACTTCCTACTCCAGATACAGCCTGCTTTTTACTTCCTAATGGAGCTCTTCAGCCAATGACAAGAGGCCTTACGGCTCCACAGACTACGACTGATGCTCCGACGGTATTAAGAGCAGCTAATAAACCCGCAACGCCAAATTCTGGAGGCAATAATTCGAATGTTAATTTATCGTCGATGGCCTCCGCACCGCTGGATCTTAGCGTAAGAAGATCCCTCGTCCCTCAGGACGAAAAGGAGAATAGAGTCTCACCGGTTCCCTCGTTACCGACGCCAGGGAGCCCTAGGTCTAGAGGTAGTAGTCCGAGAACTAGGTCTCTTCCCACAGGACAAATCAGTCCAGCACCTCCACCACCTACTGAATTAGCTTTAAGATTAGCTGAACTACCGCCGCCTCCTGTACCCGGAGTTCTCGTCAAGCAGGGAGTCTCTAGGTGTAAGGAATGTAATATCGTATTCTGTCGGCACGAGAACTTCGTTGCTCACAAAAAGCATTATTGTCAGGCCAGAGAAAACCCAGTAAGCAGTCCACCTCCTTCTGGAACACCTTCACCTCCTCTTTATCAACTAATATGTGCTGCATGTGGCATAAAATTCGCATCCCTTGACAACTTAGCGGCGCACCAGGCATTCTATTGCGAAAAGAGATCCGAGCCTTTAAAACATCAGGCAAGGTGTTCCAAATGCAAGGCAACGATAGAACCAGGAACGACGCACACTTGTACAATTGGACCCACGGGAGGTTGGCGATGTCCAGTTTGCGGATCTGTTAGTCCAACTGCCGGCGCAGCCCAAAGGCACATGGATGCGCATCAGGGTGTTAAAGCATTTCGGTGCACGATATGTCGTTACAAAGGGAATACTCTCCGCGGTATGAGAACACACATTAGAATGCATTTCGAGAAACGTGGTACAGACTTACAGGAAGAAAATTACATAACTTGTGTTCTCGACGATGAAACCATCCCGGCTGCTCCGACACCTGAACCAGTAGCCGCCACTACGCCGGATGAAATTCCAGGGGATCAAGTGATTCTTCACAGTACTTCATCAGTGAACGGAAATTCGTCGGAAGTAATTCAAAAAAGTCCACAGCTTTCACAAAGCGGCGCAACGACAGCAAAACCAGCAATATTAACAACATCAACAAGTACGACGTCAAACACACCATCCGTTGTGAtaccaaataatattattcctcACGTAGGTGTTAAACAGGAAAGAGAAGATACGCCACCGCCCGAAGAGAGTTTAGACCCTACAAAAACAGGACCAAGATATTGCCATTCTTGTGACATAAGTTTCACCTATTTGAGTACTTTTATTGCACAcaagaaattttattgctCAAGTCATGCGGGAGAAGCaagcaataataacaacaattctAGTAGCCATGTTGATCACCCTACAACAAATTCTAGTGCTCCGAGTACTCCTGTTAATTCTGCCAATGCTGCACCTACTAACAGGAGCGAAGCTTCCGTACTTTAA
Protein Sequence
MVEGRNSTNMQFKFEFKYWNTFVTGEDEEWSDSEKTPSVSSGVEGGGSGVSSPAAAHPGEEESSLPPPPRLNSEETRPCLRLQNVHSAEDGRKRFSNSKTEDIDNITCARKFQQERGPTLRTPGDLSPKDNIKIKDDDDDPIECVKVANDSTKRTSPSYNSARRKDARRTIGDTRRLEEASSPIQTKKIKLEDDNNTPKLRLNASLATDPALRPAAVAALTIQQQDNKSNTNSTPPPLPAVLQNAITSGRLFILPNDGKEETGRPVPLICPPCGIRFSSASTLEAHRTFYCAHRPRADEESANDDDDQEKTSGSKFEVRKAYACPHCSYSADKKVSLNRHMRMHAASPVAPPSIPQPPCTTPGSPSNGSIVNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDLLQPTSLKGSPPASSSPGDSPPPQPCLALPTNPILIVPYSLFRGASVLAAPALPTPDTACFLLPNGALQPMTRGLTAPQTTTDAPTVLRAANKPATPNSGGNNSNVNLSSMASAPLDLSVRRSLVPQDEKENRVSPVPSLPTPGSPRSRGSSPRTRSLPTGQISPAPPPPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARENPVSSPPPSGTPSPPLYQLICAACGIKFASLDNLAAHQAFYCEKRSEPLKHQARCSKCKATIEPGTTHTCTIGPTGGWRCPVCGSVSPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGTDLQEENYITCVLDDETIPAAPTPEPVAATTPDEIPGDQVILHSTSSVNGNSSEVIQKSPQLSQSGATTAKPAILTTSTSTTSNTPSVVIPNNIIPHVGVKQEREDTPPPEESLDPTKTGPRYCHSCDISFTYLSTFIAHKKFYCSSHAGEASNNNNNSSSHVDHPTTNSSAPSTPVNSANAAPTNRSEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00174593;
90% Identity
iTF_00174593;
80% Identity
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