Basic Information

Insect: Athalia cordata
Gene Symbol: -
Assembly: GCA_963932425.1
Location: OZ010626.1:38799523-38802042[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00044 0.036 14.6 1.1 2 23 410 432 409 432 0.95

2 9 7.3e-05 0.006 17.0 1.1 1 23 438 461 438 461 0.95

3 9 2.6e-06 0.00022 21.6 1.3 1 23 466 489 466 489 0.98

4 9 0.00031 0.025 15.0 8.4 1 23 526 549 526 549 0.97

5 9 0.019 1.6 9.4 1.5 1 23 554 576 554 576 0.97

6 9 0.00022 0.018 15.5 0.4 1 23 582 604 582 604 0.96

7 9 5.4e-05 0.0045 17.4 0.1 1 23 617 639 617 639 0.98

8 9 0.033 2.7 8.6 0.5 1 23 682 707 682 707 0.96

9 9 5.5e-07 4.6e-05 23.7 2.6 1 23 719 742 719 742 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00044	0.036	14.6	1.1	2	23	410	432	409	432	0.95
2	9	7.3e-05	0.006	17.0	1.1	1	23	438	461	438	461	0.95
3	9	2.6e-06	0.00022	21.6	1.3	1	23	466	489	466	489	0.98
4	9	0.00031	0.025	15.0	8.4	1	23	526	549	526	549	0.97
5	9	0.019	1.6	9.4	1.5	1	23	554	576	554	576	0.97
6	9	0.00022	0.018	15.5	0.4	1	23	582	604	582	604	0.96
7	9	5.4e-05	0.0045	17.4	0.1	1	23	617	639	617	639	0.98
8	9	0.033	2.7	8.6	0.5	1	23	682	707	682	707	0.96
9	9	5.5e-07	4.6e-05	23.7	2.6	1	23	719	742	719	742	0.96

Sequence Information

Coding Sequence: ATGGAACCGGCTATCGAGTGCAGCTATGTTGGTTGTGgcaaatcattgaaaaaaggaCAACAATTTCACTACTTTCCATACCACAATGCTGGCCTTTGTGTTAAATGGCTAATCAACAGCGGTCGTGAAGATTTGCTTGCATACAAATCTTCGGTTTTGGAATCTATGAGCCTCGCTATATGTGGTGACCATTTCCAGGACGATGATTATAACAGTAGAGGAACATTGAAGAAAGGGAGGGCTCCACTTCAATATTGGAATCTTGGATATCCTTGCGAGCTTGGTGAAATCAAAGTTGCTAATATGGATCAACAACAACACGATATCGACCAGCCGAGCCTTACAAGTAGTGATACTGAAGAGTCAACGGATGATGAATTCAGTACACGTTTgggaaatgaaatagaagcaCTTCTGAATTCCTTCCAGAGTCTGCGGGACAAATCACAGCATAAAAGTAAACCATATATTGGACAGTCTTTGAAGACATTTTATAAGAAATTCGATAATAAGGGAGATAGAGATAAAGATGAAAACGAAGTTAATAGGATAGGCAGTTTGACTGAACTTACGAGGGTAACCATTAATATGTGTAGAACCTGTgctaaaaaaaagaccaatCTGGTTGACATAGCGAATAAACCTGACAATTGTGATGTTGATATAATCACAAAATTGAAACTATTGATAGAGATTAAGGAGCACGACGTACTGCCGAAAAAAATCTGCTCAGAATGTTTAACCAAGTTAGAAGAttcttatgaattttttcaacaaatttataAGGCTGACAGCACTCTGCGTGATATGTTACTTATTCATAATAAACGATCGGAATGTTTatcaaagaaaaggaaatataatGGTAACAACAACAAGCGGAATGACCTTTCCGCGGAAGTAAACAATACGCCCtttaaaaatcgtttaaaaagtacaaaaataacaaatagcTACGATACAATGGACGATTCATATAACTctgataattttcaagaaaGTTCTTGTAAAAGCAATGACATCCAAGACGAAAGTAGGGTACTGGGTAAAATATACGCGAGTGATACCTCCGAAAACACCGTGAGCTATATCCTCTCAGAATCCTGTGACAATGACGAAGAATTGAGTTGGTTGGATGTTGTGGGCGCAATGAAAACGGAACGTCGAGTAAACGCGTCAACGTCTGATACGACTCTGGAAAAATTATCAGACAGCAAGCTCCGAATTTCTTGCCAATACTGTGATAGCAGTTTTAGATTGCGTCGTCAATTAAAATCACATATTAAGTTAGATCATcttcgatcaaaaaattacaactgCAACCATTGCGATATTGAGTACAAAAGTAAAGATGATTTGTCGCAACATCAGATCCAGGCCCATTCAAGAAAAAGATATAAGTGTAACGAATGTGAGGAAATGTTTTACAAAAAAGGGAATTTGAGGATACACATTAAAAAGAGCCATTCGgctaataaaaatatattgccGGACATAGAAGAACGTTCTACTTGCAGTGAGACTGTCTTGAAAACCGAAATGAAGGCTCACAAGATCTCAACTTTGGACAAAACTTTTACCTGCAACGATtgcaagaaaatattttcgtccAAACACACGCTTTATCATCACATCCACAGATTACATCCACCTTTCGCTTACACCTGCACAATTTGTAACAAAGTGATGTATAGTGAAGCAGATACTCATAAACACATGACGATACATGATAAATCTCCGTTATTTCCTTGCCTGGATTGCGGTAGGATGTTTTACAGCACCGAACAATTGGATAAGCATAAAAATGCACACGCTGAAGGTACGctgaaaaaactaaagagaGTTTGGTTCCACTGTCAGTTATGCGATGAATCGTACGCGGTAGCGGATGAATTGATCAGGCATATCGAAACTCACACGTCTGAGGACTgggaaaaatatagaaacaaaattttatattgcGGAGAATGTAGTACTCGAATAATcggtgatgaaaaatttcgaatacatAAAATGAAGTACCATTTAGCTGAAAGAGGTGATTTTATCTGCCTGTTTTGTGGGGATTTTGCAAAAAACTTTAATTCTTCACAAGAATACGCAAGACATATTAATCAGCATTCCGAtgaattgaaagaattaaCTCCCCGAAAATACAAGTGTGCGTATTGCGACAAGGCTTTCAGATCAAACTCTCATCTGATAAACCACCAAGATTCTTTCCATTCCAACATAACCCTGGGCTCGAGCCCAGAATGCACTCAACAAGTTAAACGCGCGAAAAATTCCAAAGATCAAACAGATGAATCGCGGAATTCAAAGGACCATGAAGACATACATGAGGAACCAGTTGAGAACTTGGATAAACTAGTTCCGTGGAATCAAAATTCTAATCCTAGCGGAGAACACTAG
Protein Sequence: MEPAIECSYVGCGKSLKKGQQFHYFPYHNAGLCVKWLINSGREDLLAYKSSVLESMSLAICGDHFQDDDYNSRGTLKKGRAPLQYWNLGYPCELGEIKVANMDQQQHDIDQPSLTSSDTEESTDDEFSTRLGNEIEALLNSFQSLRDKSQHKSKPYIGQSLKTFYKKFDNKGDRDKDENEVNRIGSLTELTRVTINMCRTCAKKKTNLVDIANKPDNCDVDIITKLKLLIEIKEHDVLPKKICSECLTKLEDSYEFFQQIYKADSTLRDMLLIHNKRSECLSKKRKYNGNNNKRNDLSAEVNNTPFKNRLKSTKITNSYDTMDDSYNSDNFQESSCKSNDIQDESRVLGKIYASDTSENTVSYILSESCDNDEELSWLDVVGAMKTERRVNASTSDTTLEKLSDSKLRISCQYCDSSFRLRRQLKSHIKLDHLRSKNYNCNHCDIEYKSKDDLSQHQIQAHSRKRYKCNECEEMFYKKGNLRIHIKKSHSANKNILPDIEERSTCSETVLKTEMKAHKISTLDKTFTCNDCKKIFSSKHTLYHHIHRLHPPFAYTCTICNKVMYSEADTHKHMTIHDKSPLFPCLDCGRMFYSTEQLDKHKNAHAEGTLKKLKRVWFHCQLCDESYAVADELIRHIETHTSEDWEKYRNKILYCGECSTRIIGDEKFRIHKMKYHLAERGDFICLFCGDFAKNFNSSQEYARHINQHSDELKELTPRKYKCAYCDKAFRSNSHLINHQDSFHSNITLGSSPECTQQVKRAKNSKDQTDESRNSKDHEDIHEEPVENLDKLVPWNQNSNPSGEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00174566;
90% Identity: -
80% Identity: -