Acor010189.1
Basic Information
- Insect
- Athalia cordata
- Gene Symbol
- -
- Assembly
- GCA_963932425.1
- Location
- OZ010626.1:43103779-43106655[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00047 0.039 14.4 1.4 2 20 148 166 147 169 0.94 2 13 0.0015 0.12 12.9 1.3 1 23 175 198 175 198 0.94 3 13 3.3e-05 0.0027 18.1 2.5 1 23 204 226 204 226 0.98 4 13 0.0084 0.69 10.5 2.6 1 23 381 403 381 403 0.95 5 13 0.011 0.89 10.2 1.0 2 21 413 432 412 433 0.93 6 13 0.00042 0.035 14.6 2.0 1 20 455 474 455 477 0.92 7 13 0.012 0.96 10.1 0.1 1 23 482 505 482 505 0.95 8 13 8.9e-07 7.4e-05 23.0 0.3 1 23 511 533 511 533 0.99 9 13 0.00081 0.067 13.7 5.4 1 23 540 562 540 562 0.98 10 13 0.00037 0.031 14.8 0.4 3 23 570 590 568 590 0.97 11 13 0.00042 0.035 14.6 0.2 1 23 596 619 596 619 0.96 12 13 0.36 30 5.4 0.2 1 23 633 655 633 655 0.94 13 13 0.00011 0.0089 16.5 0.1 2 23 936 957 936 957 0.97
Sequence Information
- Coding Sequence
- ATGGATGCATCTGAAAATGAACAGTATGTTGCCTTCCCGTTATCAAATGTCCACGATTCGATGCAGGAGACGATTATATCTCATGAAGAAATATGCGAACCTGTTGTCGAGTGCGTTATGTCAGATACTATGCCAGAGGTTACTGTCACTGAAGTTGGTCCTGGAATAACAGAGGTGCAGGCGGCTGTTGAGATTTTAGCAGACCAGTCGGACCCagacgacgatgataataCCTCAGTTTACCCGATCTATATAAAACaagaagaacaacaacaatataCTTCTGGAGACGACGAGTCCATGGCGGTTGAGGCTCTTCGACAGCTTGGCGGAATGTACCCCTGCTTCAGCGACAAAAAGATATCCTGCCCAAATTGTGccaatttatttacacaaatagaAATGGCCAAGCACCACCCTACTTGTGCACCAGTTGAGCTCTCCTGTACCACCTGTGGAGAGCGTTTTGAGAGGAAAATTGATCTGAATAATCACATGGTTTGTCATCAGGTCGACCGTCCACACTCATGTAGAACTTGTGGAAATTTATTCAGATCTAAAGCGAGTCTTCAGTCACATATGGCTCAGGTTCACCAGGCAGAACGACCCCACAAGTGCAATATTTGCAATTCCAATTTCCAGAGACCTTCCAGTCTGTCCAATCATATGAAAATTCACACCTACGTAGCTGGGCGAGCAATAATGCAGTCATCGTCGACCAGCAGTGGAGGACAGGCTGTTGAATCATTTCGGAAATGGCCGGAAAACAGCGGATCCGATTTGCCGAGTACCTCTGTGCCTTCTTCATCTGCTCCCGCTGTCACTAATTACGAAGTGTCGCAGGTTCATTGGTCAATACCTACGTACAATTTTAGCGACGATCAGCCAAGTGTTGGGGGACTTTCGAATCATCATGAGAAAATGGACCCTATGCACGAATTTGCCGTTATGCCCAGTACAGGAGTCAGCCAGTTTGAATATGCGCAGCAAAATGCTATAGGCAATCAGATTAATCATCAATACAATTTATCCATGAGTACTTTCAGCAACCAGGATGGAATGGTAAAGGTAGAGACCTTGCCCTACCCTAGTGACTCGCGAAGAAGCTATGTTGAGGTGGAGATGAACGACTCTAATCAGCATACATGTAGTCACTGTGGAGTCAATTTTGCAAGGGCATCAGCACTGGCGTGTCACGAGAAGATTCACACGTGCAAGAACTGGAGTATGCCTGTCGAATGTGAGTTTTGTGACAAGCAATTTCAGGATAGTAATTGTCTAGCCACGCACCAAACAACTTGTGCCAAAAAAGTTATGAGGAGCAATGCTGAGCATGGATTGCCCAACAGCAAATGGGGAAAGCATGCATGTGCAGATTGTGGGAAAAAGTTTACtactaaacaaaaaatgttcagGCACCAGTGGATCCACAGGAAGAAGACTCATTCCTGTGAAGTTTGCGGAGCTCAGTTTGAGAAGCAGCCGGAACTCGATGAGCACAGGCTCTCTGCTCATCCAGGGGATTCTGCATTTACCTGCAGTGAATGTGGAAAGAGCTTTGTCTCCAGGCAAGGACTTTGGGAGCATGCCAGAACCCACGCTGGAAGCCCTGCACACTTCCACTGTGATGTTTGCTCTAAGACTTTTTCTTCTAGACAAGGGTACCTCATACATCATCGCACCCACACCGGGGAACGACCCTATGGCTGCAAGTTCTGCTGGAAGGCATTTCGAGATGGTGGAACGCTTAGAAAACATGAGCGTATTCATACAGGCGAGAGACCTCATGTTTGCCCTCTCTGTTCTAGAGCTTTCAACCAAAAAGTTGTGCTCAGAGAACACGTTCGGTGGGTTCATGCAGCTGGTAAAAATGAGACAGAAGTTACAGGCCCTCCTTTTCGATGCCCACTGTGCGGAGCTCTCAATCAGGACAGGGATGAGCTATGTGCCCACATTGTAAAACACTCTGACCAAATGATAGCTGATGCCAAAGCTAAAACAAACAATAACGCCTCCAAGCCAAAGCCGACTAAGAAGAAATCTAAGGCTTCTGCAAGCTCTGGGTCTTCTTCAGGAAAACAGAATGCTGGAAGTCGGTCAATTTCGAGGATGGAACAAAACGAAGCTCTGCTTTCTATTTCCGAAGCAACCTCCAAAACATCCGATAGTCCACCACAACTGATGGGAGCCAACAAAGCTAATGATGCTTTGCTGCTGATTACTCCTGCCAAACATAACGACGCTTTGCGATTGATTTCCGAAGTTAAGCAAAATGATTTACATTTGATAGCGCAGGGTAAGCAAAGCGAGAATCTTCACATCCCCCAGATTATTCATAGAGAATCTCTTAGTATAACTTCTGCCACGGATAAACAGGGTTGTAGCGTGCGAATGGTTCCCTCGGAACAACAGAGTAACACACTTCGCGCCAATTCTGGAAGTAGACACAACGATGGTAATGCCATTCATTTGCTGTTGGCCTCAAAGCAGAATGACAGCGTTCATTTGATTTCGCAAAATAAGCAGAACAATACGTTGCACCTTATTTCTAAACAAAATGAATCTCTGCCAGTACTGACCATACCAAATCCCcaaaatcatgaaaatttttccagtCAGATTACGCAGATAAACAATGTAGAAATGCCCATGAACATGGTCACTCATCATTCTTcccagcaccagcagcagcagcagcacggGGAGCGAATCAAACCACAAAGTTCTGTACAAAAAGTTAGTCAAGCGACCTCCGCAGTCCAGGGTCAATATCAACAACGGGAAAGCGATGACAGTGAAGAGCCTGTGTGTGGTATGTGCGGGGAAGAATTCACAAATAAAAACTTACTTATGGAACATGttaaaattcatatataa
- Protein Sequence
- MDASENEQYVAFPLSNVHDSMQETIISHEEICEPVVECVMSDTMPEVTVTEVGPGITEVQAAVEILADQSDPDDDDNTSVYPIYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFSDKKISCPNCANLFTQIEMAKHHPTCAPVELSCTTCGERFERKIDLNNHMVCHQVDRPHSCRTCGNLFRSKASLQSHMAQVHQAERPHKCNICNSNFQRPSSLSNHMKIHTYVAGRAIMQSSSTSSGGQAVESFRKWPENSGSDLPSTSVPSSSAPAVTNYEVSQVHWSIPTYNFSDDQPSVGGLSNHHEKMDPMHEFAVMPSTGVSQFEYAQQNAIGNQINHQYNLSMSTFSNQDGMVKVETLPYPSDSRRSYVEVEMNDSNQHTCSHCGVNFARASALACHEKIHTCKNWSMPVECEFCDKQFQDSNCLATHQTTCAKKVMRSNAEHGLPNSKWGKHACADCGKKFTTKQKMFRHQWIHRKKTHSCEVCGAQFEKQPELDEHRLSAHPGDSAFTCSECGKSFVSRQGLWEHARTHAGSPAHFHCDVCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVTGPPFRCPLCGALNQDRDELCAHIVKHSDQMIADAKAKTNNNASKPKPTKKKSKASASSGSSSGKQNAGSRSISRMEQNEALLSISEATSKTSDSPPQLMGANKANDALLLITPAKHNDALRLISEVKQNDLHLIAQGKQSENLHIPQIIHRESLSITSATDKQGCSVRMVPSEQQSNTLRANSGSRHNDGNAIHLLLASKQNDSVHLISQNKQNNTLHLISKQNESLPVLTIPNPQNHENFSSQITQINNVEMPMNMVTHHSSQHQQQQQHGERIKPQSSVQKVSQATSAVQGQYQQRESDDSEEPVCGMCGEEFTNKNLLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00175923;
- 90% Identity
- iTF_00174519;
- 80% Identity
- -