Basic Information

Insect: Athalia cordata
Gene Symbol: -
Assembly: GCA_963932425.1
Location: OZ010627.1:12984189-12986297[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0009 0.075 13.6 0.8 1 23 301 324 301 324 0.97

2 10 6.8e-06 0.00056 20.2 0.6 1 23 330 352 330 352 0.99

3 10 3.1e-07 2.6e-05 24.5 0.7 1 23 358 380 358 380 0.99

4 10 0.0089 0.74 10.4 0.3 1 23 386 408 386 408 0.98

5 10 2.5e-06 0.00021 21.6 0.2 1 20 414 433 414 434 0.96

6 10 0.029 2.4 8.8 2.4 1 23 443 463 443 463 0.94

7 10 4.5e-07 3.7e-05 24.0 0.3 3 23 471 491 470 491 0.99

8 10 0.00012 0.01 16.3 1.4 1 23 497 519 497 519 0.98

9 10 0.0011 0.095 13.2 2.5 1 21 525 545 525 548 0.96

10 10 0.004 0.33 11.5 3.2 1 22 554 575 554 575 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0009	0.075	13.6	0.8	1	23	301	324	301	324	0.97
2	10	6.8e-06	0.00056	20.2	0.6	1	23	330	352	330	352	0.99
3	10	3.1e-07	2.6e-05	24.5	0.7	1	23	358	380	358	380	0.99
4	10	0.0089	0.74	10.4	0.3	1	23	386	408	386	408	0.98
5	10	2.5e-06	0.00021	21.6	0.2	1	20	414	433	414	434	0.96
6	10	0.029	2.4	8.8	2.4	1	23	443	463	443	463	0.94
7	10	4.5e-07	3.7e-05	24.0	0.3	3	23	471	491	470	491	0.99
8	10	0.00012	0.01	16.3	1.4	1	23	497	519	497	519	0.98
9	10	0.0011	0.095	13.2	2.5	1	21	525	545	525	548	0.96
10	10	0.004	0.33	11.5	3.2	1	22	554	575	554	575	0.94

Sequence Information

Coding Sequence: ATGACGAACGTCGAAGAATCATCaacggttgaaaatttttccggaGTTGAAACAAATTCCAGGGATGATATTCAACTTACAGAATTGCTTCCGGTTAAAAAATTGTCAGTTATTTGTAACGGTACAGATAGAGATGATTGTAAGGACGACGACGTGGTAGCTGACGCTTTTAAAGCGCTTCGCGAAGGGAACAAACACTTCTCTATAAATGGGGATGAATTTTGCGACgacggaaatgaaaaaacgctCGATAATAAACATGGAGAACTTATCGTTATGGAGATTGAGACATCGATAAATTCTAACGTTTTAGAAAAGTTTAATGATCTTCAAACgaggatgaataaaaatttcgataagGTTGGCGATATCGATtgctcaaaaaaaaaggggaacagagtttttaaaaaacgtataaaatacCTCAAAAACCGACAGCAAGCCGTTACCCAAACCAAAGAAAATCAAACTCACCAAATCAGCGCTTTTTCCCTGGATTCCGATAGCCACGACATCAtactctcctcctcctcctcacGATTGCTGAACCTGGAAACGAATAATGAGAGAATCATCACGGAGACGTCAAAGTTTGATGCAACACGTGGTAGAAATCTATCGAAGATAAAATCAAACGGTCATCACAACATGAACGGCGATGCTTCTAAATCAAAAGATAAACCGAAACGCGTGTCAGATTCCGAGGGTACAGAGGACGATCACAGTctacgtgaaaaaattgacgCGATAATACAAGCGAACTACGTATTAGAACGTAAAAACAACAACACGATGCGTGAAAATCGCAACAGTTTGAAAAACGATTCGGTAAATAATTCCGATGGATCTGAAATGGACGTAAGAAATTCTGAGGAAGACTCGTCATCGtcacaaaaaaaacacaggTGTGCTATATGCAAAGCTAGATTTAAGGGAAGCGGTGGTCTGCGGACTCATTACAAGGTTGTTCACGCGGCAGGACCAATGTTCACCTGTAACGAATGCGGTAAAGAATTTCCATTGAAGGAACGACTGAAACTCCATGTTAGAACGCACACTGGTTATAAACCTTACAAATGTACGGAATGTGACAAAAGTTTTGCACGCGGTGGTCAGTTGGTACAACATCGTCGTACACATACTCAGGTAAAACCTTATCGTTGCGTTATATGTCCGGGAACATTTTCGTGCGCCGCAAATCTCGCTTTGCACGTAAAACGTCACAATGGTCAAAAAGATCACAAGTGCGAGATATGCGGTAGAGCATTTGTTAGAAGAGATGCTTTAAAAAAGCACTTGGAATGTCTTCACAAAGACGTTAAATCATTTCTATGCGTAAtatgtaacaaaacatttaaAGGACATCTTCCGCAACACATGAGAACACACGCACAAGACAGACCGCACGGTTGCGCTATTTGCGGTCAAAgatttgcccaaaaatcacAATTAACGGTTCACCAAAGAACGCATTCCGGACAACGACCGTTCAGATGTTTAGTTTGTTGGCAAGCGTTCGCACATTCGACCGCATTAAAATTACACACCAGAAGACACACGGGAGAAAGACCGTTCAAATGTGCCGAATGTAACGCTGGATTCACTCAATTACCACATTGGAAAAAACACATGCGTTGCGTTCATGGACGGACCGATCCCTACTGTTGTAAAAATTGTAACACATTCTTCAGGATAAAAAGCGACCTTGAAACGCACGAAAAAACCTGTATGGTTATGGATTCGCAATTGGAAAATGTCGATGTTGATAATCGTGGAGTTTCAGGGCGTCCGATTGTTCCGAAATATCGTATAATgacggttgaaaaaatgagattaCTTCTCGCGGTTTTAtttaaaagaatttcaaaacccGAACGTCTCGATGAACTCGGATTTGGTAAACGATTGATAGACCAGGTCCTCAAGGACTCGTTACTATCGGCTGGAAAAGATCCGGCGGAGAGTAACGACTGCAGCGAATTCGAGgttctcaaaaaaaatttagcaacATTTTTAGAATGGACAGTGCCCAGGGAGCACTGGGAAGCTTttaagaaattgaataaaacacCGGAAGAGATACTAGAAACGCTGACAGTTAGCCAGTAG
Protein Sequence: MTNVEESSTVENFSGVETNSRDDIQLTELLPVKKLSVICNGTDRDDCKDDDVVADAFKALREGNKHFSINGDEFCDDGNEKTLDNKHGELIVMEIETSINSNVLEKFNDLQTRMNKNFDKVGDIDCSKKKGNRVFKKRIKYLKNRQQAVTQTKENQTHQISAFSLDSDSHDIILSSSSSRLLNLETNNERIITETSKFDATRGRNLSKIKSNGHHNMNGDASKSKDKPKRVSDSEGTEDDHSLREKIDAIIQANYVLERKNNNTMRENRNSLKNDSVNNSDGSEMDVRNSEEDSSSSQKKHRCAICKARFKGSGGLRTHYKVVHAAGPMFTCNECGKEFPLKERLKLHVRTHTGYKPYKCTECDKSFARGGQLVQHRRTHTQVKPYRCVICPGTFSCAANLALHVKRHNGQKDHKCEICGRAFVRRDALKKHLECLHKDVKSFLCVICNKTFKGHLPQHMRTHAQDRPHGCAICGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCAECNAGFTQLPHWKKHMRCVHGRTDPYCCKNCNTFFRIKSDLETHEKTCMVMDSQLENVDVDNRGVSGRPIVPKYRIMTVEKMRLLLAVLFKRISKPERLDELGFGKRLIDQVLKDSLLSAGKDPAESNDCSEFEVLKKNLATFLEWTVPREHWEAFKKLNKTPEEILETLTVSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00174516;
90% Identity: iTF_00174516;
80% Identity: -