Acor010256.1
Basic Information
- Insect
- Athalia cordata
- Gene Symbol
- -
- Assembly
- GCA_963932425.1
- Location
- OZ010627.1:491707-494067[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.018 1.5 9.5 0.0 1 23 300 322 300 322 0.96 2 12 1.3 1.1e+02 3.6 2.8 1 21 323 343 323 344 0.91 3 12 1.2e-06 0.0001 22.6 1.4 3 23 393 413 392 413 0.98 4 12 9.3e-05 0.0077 16.7 0.2 1 23 419 441 419 441 0.98 5 12 0.00016 0.014 15.9 2.6 1 23 447 469 447 469 0.99 6 12 1.5e-05 0.0013 19.1 1.5 1 23 475 497 475 497 0.98 7 12 0.00011 0.0094 16.4 1.4 1 23 503 525 503 525 0.98 8 12 5.7e-06 0.00047 20.5 0.6 1 23 533 555 533 555 0.98 9 12 0.0004 0.033 14.7 0.3 1 23 561 583 561 583 0.96 10 12 2.5e-05 0.0021 18.4 1.1 1 23 589 611 589 611 0.98 11 12 1.9e-05 0.0016 18.8 0.6 1 23 617 639 617 639 0.98 12 12 4.9e-05 0.0041 17.5 3.3 1 23 645 667 645 668 0.96
Sequence Information
- Coding Sequence
- ATGGCTGTTGCCGAGGAATTCAGCGAGCTTTGCCGACTATGTGCTGCTAAAACTAGTCTACTACTTGGTTTACCTATTTTTGATAGCGACGGTGAGATGCGACACATCGATCAAAAGATTTCAGCTTGTCTTCTGCTACAGGTTTCGCTCACTGACAAACTTCCGAAAGTAGTGTGTGAGGAGTGCTACTATAAGTTGGACCAGCTCTATGATTTCAGAGAAAAGTGTTTGCGCACCGAAGGAATGTTCTTAGCAATGCTCAAAGAAGTTGAAGTCTCGCAAGTCCAGTTTAAAGACGAGTGTGGAGGCGTCAATCAGTTGCAAGCCATGCGTGTCATGGATGACATGGATTTAGCTGGAGGAGAACAGGTTGTCTCTCAGGAGGAGATTTGTCAAGGTGGAGACATCCAAGTTGCTGGTATCAAACTTGACGGCGATACCGTACACTTGGTAGACCAGCACATGCGCAATATTCAGGACGAGGTATCTAGTCAGCAGATCACAATGCATCTTGAAGGCAATATGACAGTGGTGAGTAATCTTACAGTTGGAGCAGACCTTGGTCAACTGGACATAAAGTATGTGACCTCCATAGAACCCAACGGTCAAAGCTGTGAAGAGGCATGCCAAATTGTTCAGGATGCAGAAAATGGTGCAGTCCACAAATCCGATAGCGAAGAAGAGAGCGAAGTTGATAATTCTGGCGATAGCGAAGCGGATACTACACGAATAGAGGGTGCTTACCACGACGATATGGTCGCATCGACGAGCGGAGAACAGGAATGTTCTAATGGGAATGGAAACGAGACAACGGTGGAATATACGAAAATGGCAAAAGATTCGCTTCTAGAGGCGATTCTAACAAATCCAAGTATAGATGAAACTGGAAATAGCTGGTATGTCTGTCGGCTTTGCAACGAGGCAGCGACGGAACCTTCAAATTTAGCTGATCATTTCGAGGTGCATTTCTGCTGCTGTGCCTGCGGCATTTATTTCACCAGTGTGGAGGCACTCAATATTCACAAGCAACACTGCCAGCCCAGTAAAAGTAAGGAGGTAACAGGTATCACAAATTCTACAAGTGATGTTGATGGCTGCGGAGAAATTGTAATAGACGCTTtagaggaggagaaaaagtcTGGAGGTACTGCACGGCAAAAATGGACACCAAAAATATGCAGCGAATGCGGGAAACAGTACAGAACTAACTACAAGCTCCAAGAACACATGAGGAAACACACTGGGGAAAAACCGTTCCAGTGTCTACTCTGTGAAAAAGCATTCCGTAGCAAAATTGGACTTGCTCAACACACTGCGACACATACAGGACAGTTCGACTATACTTGTTCTACCTGTGGAAAGGGATTTCAGTGCAAAAGTTATTTAATCGTTCACCAGAGAGTTCATTCGGATCTAAAACCATACCCCTGTAGCACCTGTGGTCAAAATTTTAAGACAAAGCAGTCCCTGTTAGACCATCGAAATCGTCATCTTGGTGTTAAACCATACATGTGTGAGATATGTGGTAAGGGATTTATAACGAAAGGCCTTTGTAAGAGTCACCAGAAAATCCATTCGGGTAAAGACAATCGGCAGTATCCATGCATGGTGTGCAACAAGTTATTCGTAAGTAAAAGCTACCTTAATACTCATCTTAGAATTCACACTGGGGAAAAACCTTACAAATGCGAGGTGTGCGGAAAAGGTTTTCTGACAAGGGTTGACTTGAGAATTCACTCTACGATGCACACTGGTGAGAAAAGCTTTGTTTGCGAAATGTGTGGCAAAGCTTTTGCTCGTCGCGCGGCTCTTCGATGCCACCGGAGATCCCACACCGGTGAAAGGCCCTACAGATGTGACGTTTGTGGTAAAACTTTCACTCAGTTCAGCCCAATGGCGATACACAAAAGATTGCACACCGGTGAGAGACCTTACGAGTGTGACGTCTGCAGAAAGGCCTTTGTGTCAAGATCAACTATGACATCTCATCGCAAGAAACATCACTTGCCTAATACAGCTGACCCTAAAGAAGCTGCTGGACAAGCGCATGAAATAATGCCTACAGAGATAGTTCTTAAGGGTGCCAATGATGGGGTACAAATAACTGGAGATTGA
- Protein Sequence
- MAVAEEFSELCRLCAAKTSLLLGLPIFDSDGEMRHIDQKISACLLLQVSLTDKLPKVVCEECYYKLDQLYDFREKCLRTEGMFLAMLKEVEVSQVQFKDECGGVNQLQAMRVMDDMDLAGGEQVVSQEEICQGGDIQVAGIKLDGDTVHLVDQHMRNIQDEVSSQQITMHLEGNMTVVSNLTVGADLGQLDIKYVTSIEPNGQSCEEACQIVQDAENGAVHKSDSEEESEVDNSGDSEADTTRIEGAYHDDMVASTSGEQECSNGNGNETTVEYTKMAKDSLLEAILTNPSIDETGNSWYVCRLCNEAATEPSNLADHFEVHFCCCACGIYFTSVEALNIHKQHCQPSKSKEVTGITNSTSDVDGCGEIVIDALEEEKKSGGTARQKWTPKICSECGKQYRTNYKLQEHMRKHTGEKPFQCLLCEKAFRSKIGLAQHTATHTGQFDYTCSTCGKGFQCKSYLIVHQRVHSDLKPYPCSTCGQNFKTKQSLLDHRNRHLGVKPYMCEICGKGFITKGLCKSHQKIHSGKDNRQYPCMVCNKLFVSKSYLNTHLRIHTGEKPYKCEVCGKGFLTRVDLRIHSTMHTGEKSFVCEMCGKAFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYECDVCRKAFVSRSTMTSHRKKHHLPNTADPKEAAGQAHEIMPTEIVLKGANDGVQITGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00060553;
- 90% Identity
- iTF_00175904;
- 80% Identity
- -