Acor011059.1
Basic Information
- Insect
- Athalia cordata
- Gene Symbol
- -
- Assembly
- GCA_963932425.1
- Location
- OZ010627.1:8469632-8471335[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9e-05 0.0074 16.7 0.6 1 23 152 174 152 174 0.93 2 10 3.6e-06 0.0003 21.1 1.4 1 23 180 202 180 202 0.99 3 10 2.4e-07 2e-05 24.8 0.8 1 23 208 230 208 230 0.98 4 10 0.00031 0.026 15.0 1.1 3 23 238 259 237 259 0.97 5 10 2.5e-05 0.002 18.5 3.7 1 23 264 286 264 286 0.97 6 10 9.7e-06 0.00081 19.7 2.1 1 23 295 317 295 317 0.98 7 10 1.9e-06 0.00016 22.0 1.1 1 23 323 345 323 345 0.97 8 10 2.4e-05 0.002 18.5 1.3 2 23 352 373 351 373 0.97 9 10 1.5e-05 0.0012 19.2 3.6 1 23 379 401 379 401 0.98 10 10 5.4e-06 0.00045 20.5 0.8 1 23 407 429 407 429 0.98
Sequence Information
- Coding Sequence
- ATGCCTAGAAAGTATTACCAGCATATATTTGACAAAAAGACAACAAGGGTCGCAGCAATCGAAATCGACTTTTTCCAGAGACATACTTGGTTATCTGGGTACCCAGCAGCGATAGCATTAAACCTGAAAATAGCGAAGCGTCCAAGAGAGATTTCGATAACTCCGGAAACAGAACACGTCTTGATCACGGCAGTTGATGATACATGTTTAAGAGAAGAGGGTGAATGTTTGTCAACGCAGGATGATCGGGGAAGTTCTTCGTACGAAGTAACCTTGAAAGCACCAAACTCACTGCCAAATAGCGACACCCGAGTAGCATTGACATATGAAGAACTTCAAGGTTTCGAAACATCCGGAGAAAGTGCCTTTGAGACAATAGAGAATTCTCCCTGCAAGTATGACGTGACTTCTAAAAAATCTATCGACAAAGAAGTTATACAATCTACAAAATATTACCGATGTGACATTTGTGAAAAGAAGTTTAGATCGAAAAATCTATTCGAGGGGCATTTGGTGGCGCACAGCGACGCGCGACCTTACAGGTGCGACGTATGCAGCAAATCTTTCAAACGTACAAATACTCTGGCGGTTCACAAGAGGATTCATACAAGAGAACGTAATTTCATATGTGATGTGTGTGGTAGATCGTTTATACAAGCTTCTCAACTGGCTACGCATCACAGAAGacactttgaaaaatacacaaaGTTCTGCGATGTATGCAACAAGGGATTCTTCACAAATGCTGAGCTACATGGACACATGAACGTGAAACACGAGGCTAAGGAGCATGTGTGCAAGACGTGCAGCAAGGCCTTTCCCAACAATCATACCCTTACGCGACATGCTAAGATCCACGAACCCAATTTTAAGCCAGTTAAACATCAGTGTGAATTTTGCGGGAAGACTTTTGCTTATAAAAACTCACTTGTATTACACGTCAAGTCGCATACCGGTGACAATAAGTTTGACTGTCATTTGTGCGGGAAATCAGTTTCGTCAAAAGGTTCGCTACAGGATCATCTGCGTCTCCACGGAGGCGAAAAATCTCTCGTGTGCGACGTGTGCGGAAAAGCTTTTCACAAAAGGACCACTCTCGTTGTCCACAAAAGAACTCACACCGGCGAAAAACCATACAGTTGCGATACCTGTGAAAAATCCTTCACGCAGCATTCCACATTAGTTATTCACAAACGATATCACACAGGCCAAAGACCCTATCAGtgtaatttttgtacaagATCTTTTGTCTCTAGGGCATTACTCAATGCTCATAACAGAGTTCATATGGTAAACGTTACAATACAAGAACTTAATTGa
- Protein Sequence
- MPRKYYQHIFDKKTTRVAAIEIDFFQRHTWLSGYPAAIALNLKIAKRPREISITPETEHVLITAVDDTCLREEGECLSTQDDRGSSSYEVTLKAPNSLPNSDTRVALTYEELQGFETSGESAFETIENSPCKYDVTSKKSIDKEVIQSTKYYRCDICEKKFRSKNLFEGHLVAHSDARPYRCDVCSKSFKRTNTLAVHKRIHTRERNFICDVCGRSFIQASQLATHHRRHFEKYTKFCDVCNKGFFTNAELHGHMNVKHEAKEHVCKTCSKAFPNNHTLTRHAKIHEPNFKPVKHQCEFCGKTFAYKNSLVLHVKSHTGDNKFDCHLCGKSVSSKGSLQDHLRLHGGEKSLVCDVCGKAFHKRTTLVVHKRTHTGEKPYSCDTCEKSFTQHSTLVIHKRYHTGQRPYQCNFCTRSFVSRALLNAHNRVHMVNVTIQELN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00174488;
- 90% Identity
- iTF_00174488;
- 80% Identity
- -