Acor008624.1
Basic Information
- Insect
- Athalia cordata
- Gene Symbol
- -
- Assembly
- GCA_963932425.1
- Location
- OZ010626.1:26165755-26170247[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.34 29 5.4 3.3 1 23 304 326 304 326 0.90 2 12 0.00013 0.011 16.2 1.3 1 23 331 355 331 355 0.94 3 12 0.0035 0.29 11.7 0.3 3 23 416 437 414 437 0.96 4 12 4.4e-05 0.0037 17.7 2.2 1 23 443 465 443 465 0.97 5 12 0.0039 0.32 11.6 0.1 1 23 474 497 474 497 0.89 6 12 2.3e-07 1.9e-05 24.9 3.6 1 23 503 525 503 525 0.98 7 12 1.7e-06 0.00014 22.1 0.4 1 23 531 553 531 553 0.98 8 12 3.2e-05 0.0026 18.1 2.0 1 23 559 581 559 581 0.97 9 12 1.7e-08 1.4e-06 28.4 0.5 1 23 587 609 587 609 0.99 10 12 1.1e-05 0.00091 19.6 5.7 1 23 615 637 615 637 0.98 11 12 1.1e-05 0.0009 19.6 1.6 1 23 671 693 671 693 0.98 12 12 1.2e-07 1e-05 25.7 1.9 1 23 699 721 699 721 0.98
Sequence Information
- Coding Sequence
- ATGGAGGTCCCGCTTTATGATTCAGCCGTTTGTCGATTATGTGCGGAAGACAACGGCAACGGGGAATTCTTGTACACAGCCGACGGAGAAGATGCAGATTTAAGCTCCATGGTGAATCGCTACTTGCCACTGAAGATTCGAGATGACGGCAAGCTACCTCGTACAATTTGCCCAGGATGCAATATACAGTTGGAGGCAACTGTACAATTCTTTGAATTGCTTGTTGACGGGCAGAAAAAGATTCGTGAAATGTGGAAATCGCAAGTCGATCAACAGCGAAAAGCTGAAAGAGAAAGACTTCGAGCGGAAAGAGAGCACACCGAGCTAGAACTCGTTACACCTGAGCTGGATAATTTTGGTTTACAGACAGAGGATGACCAAGTTGAAAGGCAAATTGTCATCAAAAtCATGCCAGATGGAACTTTATACACAGCTGAGCATGAGATGAGTTTGCAAATGGAGGGATTAGAAAAGCcaaggagaaaaagaggacGCCCTCCCAAGGTTCAGGCCGAGGTTGATCTTAAGGATCTGACAAAAGAGATAAAACAGGAAGCTGGTAGCCAAGGGGAGGACGAAAAGCAAGAAGAGGAGCTGGAGGAGGTAGATGGGGATGGCCGACGCCGCCGAAAACGAAAGGTTCCCAAGAGATTCATGGAGGCTGTGCAGGGCAAAGAGCTCGAGAGGATATTCAAGGAGGAAGGGGTGATAGATGAGGAAGAGGATGACAACGAACCAGATAATGACTACGATGATCCGGAGGAGCGACTTAATCTGCCAACTCCCGATGGGCAAGAAGAAATCATTGGCCATTTGGAAACCCAGGAGGGGAAAGACTTGGGTGAGCTTGTCATTGTGAATCGTGGCAGAGGGAGAGGTAGACCGCGTCTTCGGAAGCGAAAAACCAAGTTCACCTGTCATTTATGTGGTAGAGGATTTTTGCAACGCAGCAGATATATAATGCATAAGAGCTTCCACAAAGGTGTCAAGTATGAATGTCTTGAGTGTAAGAAGCAGTTTACAAATAGAGACAACTTTGGGCTTCATCAAAAAACCTCGGGGCACACCGGGGAaggaataatagaaaatcaaGTAGATAATGAGGTTCGCAGTCAAGAGTCTCCCATTGCTGAGGAGGGTGCGAATATTGTAACTGGTGTGTCACGAGATGAGCAAGATATCGTGGCGGAAATGCTGCCGACGGATGAAGGTGCTCCTCTGGAGAATGATGGGCAAGTAACAGATTGCGAACAATGCCAAAAGCAGTTCCCGTCAAGACAGAGTTATGAAGTGCATGCCAAGATGGTTCATCAAGGAGAGAAACCATACACATGTAATCTTTGCAACAAAACCTTCGCCTATCACACAAGCCTGAAGGGACACATGCTCGCACACGAAGCCAACAAGTCTGACAAAGGATTCCCCTGTGATATTTGTGGTAAGGTCCTGAATCATCCCAGCTCTGTTGTCTATCACAAAGAGGCTGAGCATAATAACGGACGTCGTTTCGTTTGTAATAAATGtggaaaaagtttcaaacacAAACAGCTGCTGCAACGTCATCAACTCGTGCACTCGGACGATCGTCCATATGTATGCAAATCCTGTGGTGCGACGTTCAAGACCAAGGCCAATCTCATCAATCATCAGTCCATCCACACCggggaaaagaaatactttTGTGAAATATGCGGGCAGCAATTTGCACATAAAACTAGTCTCACGCTTCACTATCGATGGCACACTGGCCACAAGCCCTACACCTGTGAGGTCTGCAGCAAAAGCTTCTCACAGAATGGAAACCTTCAGGAACACATGCGAATTCACACTGGAGAGAAGCCCTACTGCTGCGATTACTGCGGAAGGAAATTCACGACCTCCTCACAGTTCAAGCTCCATGTTAAGCGGCACACGGGCGAGCGACCATGGAAATGTGAATTCTGCGCCAAATGTTTTCTGCATAAAGATACATGGAAATGTCATGTCAGACGGCACAAAGGTGAACGTCCATTCCAATGTGCTCATTGTAATCGTGGCTTCACCGAGCAGTGGGCTCTCAAAAAACACCTCCGATTGCACACAGGGGAGAAGCCGTACTCTTGTAATATCTGTGGAAAAGCATTCGCCGATTGTTCGAACCTCACGAAACATAAAAAGGTGCATAGAGAAAATAAGGTGGTAGGGGTTGGCGAGCTATCGGAGAATTCTGCGATAGGTGAGGTGTGGCAAATATTGCCGGGATCGCATGAAGGAGACGAAAATTCGCTCGGAGATCAGGTGACCCAAGTACTTCCCGCGGATGAAGCATCCAGCGATGGAATTCAACAAATAATATACGTCTCCTATCAAGATCCAGACGATCCAAACCAGTCGAGAACCCTCCATTTCGtCGATGCCGGAATGATGGAAAACAAAGAGGTTGCTGCTGCGCCGGGAAGTCAATCGTTGCCATCACTGGAAGCTGAAGAAGGAGACGAGGTGACGGAACATGTGACGCAGGATGAAGAAAATCCCGAACCAGATGAGAGAATTAACATGGAACTGGCGGAGTCTGACCTACAACTTCAGATCACTGACGAAGAGGGAAATCCTATTCCGCTATCGATTCAGGATGCACGGCAGCTGCTCTCCGAAGGTCAGTTCGTAAGTCAACTTGAAGATGGACAGACCATCAGAGTTCATTCTGGAGTTCTAACTCAAGAATTGGCGCAGCAGCTCGAAGTTGAGGAGCAGGGTTCCATGGGGATGGAGGAGACCGACGGAGCTGCGGTAGATGGGACGGGAAATACTGTGACATTGACTTCGAGTCACACCCATGCCGACGCAGAAGACATCGTCAAGGCCTTGGAGGACGAGGACACCGATGCAACAGCAGTTGCTACTGTGAACCACCAGCTCGAGACGGAAGAACAGACGGAGATGATGGATGGAGAACAGACAATAGAGTTTACGACCCAGGACGGGCAAAAAGTACGCTTAGTCACCTCCTACCACGTTGATCCAATGCAACTCGCCTCTGAGTACCTTACTATTGTTTAA
- Protein Sequence
- MEVPLYDSAVCRLCAEDNGNGEFLYTADGEDADLSSMVNRYLPLKIRDDGKLPRTICPGCNIQLEATVQFFELLVDGQKKIREMWKSQVDQQRKAERERLRAEREHTELELVTPELDNFGLQTEDDQVERQIVIKIMPDGTLYTAEHEMSLQMEGLEKPRRKRGRPPKVQAEVDLKDLTKEIKQEAGSQGEDEKQEEELEEVDGDGRRRRKRKVPKRFMEAVQGKELERIFKEEGVIDEEEDDNEPDNDYDDPEERLNLPTPDGQEEIIGHLETQEGKDLGELVIVNRGRGRGRPRLRKRKTKFTCHLCGRGFLQRSRYIMHKSFHKGVKYECLECKKQFTNRDNFGLHQKTSGHTGEGIIENQVDNEVRSQESPIAEEGANIVTGVSRDEQDIVAEMLPTDEGAPLENDGQVTDCEQCQKQFPSRQSYEVHAKMVHQGEKPYTCNLCNKTFAYHTSLKGHMLAHEANKSDKGFPCDICGKVLNHPSSVVYHKEAEHNNGRRFVCNKCGKSFKHKQLLQRHQLVHSDDRPYVCKSCGATFKTKANLINHQSIHTGEKKYFCEICGQQFAHKTSLTLHYRWHTGHKPYTCEVCSKSFSQNGNLQEHMRIHTGEKPYCCDYCGRKFTTSSQFKLHVKRHTGERPWKCEFCAKCFLHKDTWKCHVRRHKGERPFQCAHCNRGFTEQWALKKHLRLHTGEKPYSCNICGKAFADCSNLTKHKKVHRENKVVGVGELSENSAIGEVWQILPGSHEGDENSLGDQVTQVLPADEASSDGIQQIIYVSYQDPDDPNQSRTLHFVDAGMMENKEVAAAPGSQSLPSLEAEEGDEVTEHVTQDEENPEPDERINMELAESDLQLQITDEEGNPIPLSIQDARQLLSEGQFVSQLEDGQTIRVHSGVLTQELAQQLEVEEQGSMGMEETDGAAVDGTGNTVTLTSSHTHADAEDIVKALEDEDTDATAVATVNHQLETEEQTEMMDGEQTIEFTTQDGQKVRLVTSYHVDPMQLASEYLTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01303649;
- 90% Identity
- iTF_00174485; iTF_00175898;
- 80% Identity
- -