Basic Information

Insect: Athalia cordata
Gene Symbol: -
Assembly: GCA_963932425.1
Location: OZ010626.1:35352470-35357487[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.4e-07 2e-05 24.8 6.7 1 23 350 372 350 372 0.99

2 14 3.8e-05 0.0032 17.9 1.0 1 23 378 401 378 401 0.95

3 14 8.1e-06 0.00068 20.0 0.9 1 23 407 429 407 429 0.98

4 14 0.0015 0.13 12.8 1.7 1 23 435 457 435 457 0.95

5 14 0.00011 0.0089 16.5 5.2 1 23 463 485 463 485 0.97

6 14 0.0011 0.092 13.3 2.3 1 20 643 662 643 664 0.94

7 14 0.11 8.8 7.0 0.7 1 22 721 742 721 744 0.88

8 14 7.5e-05 0.0062 17.0 1.8 1 23 777 799 777 799 0.98

9 14 2.1e-05 0.0017 18.7 1.4 1 23 805 828 805 828 0.97

10 14 7.4e-07 6.2e-05 23.3 0.5 1 23 834 856 834 856 0.98

11 14 4.6e-07 3.8e-05 23.9 2.0 1 23 862 884 862 884 0.98

12 14 6.9e-06 0.00057 20.2 1.0 1 23 890 912 890 912 0.98

13 14 0.00025 0.021 15.3 4.0 1 23 918 940 918 940 0.96

14 14 0.00016 0.013 15.9 0.9 3 23 948 969 947 969 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.4e-07	2e-05	24.8	6.7	1	23	350	372	350	372	0.99
2	14	3.8e-05	0.0032	17.9	1.0	1	23	378	401	378	401	0.95
3	14	8.1e-06	0.00068	20.0	0.9	1	23	407	429	407	429	0.98
4	14	0.0015	0.13	12.8	1.7	1	23	435	457	435	457	0.95
5	14	0.00011	0.0089	16.5	5.2	1	23	463	485	463	485	0.97
6	14	0.0011	0.092	13.3	2.3	1	20	643	662	643	664	0.94
7	14	0.11	8.8	7.0	0.7	1	22	721	742	721	744	0.88
8	14	7.5e-05	0.0062	17.0	1.8	1	23	777	799	777	799	0.98
9	14	2.1e-05	0.0017	18.7	1.4	1	23	805	828	805	828	0.97
10	14	7.4e-07	6.2e-05	23.3	0.5	1	23	834	856	834	856	0.98
11	14	4.6e-07	3.8e-05	23.9	2.0	1	23	862	884	862	884	0.98
12	14	6.9e-06	0.00057	20.2	1.0	1	23	890	912	890	912	0.98
13	14	0.00025	0.021	15.3	4.0	1	23	918	940	918	940	0.96
14	14	0.00016	0.013	15.9	0.9	3	23	948	969	947	969	0.96

Sequence Information

Coding Sequence: ATGAGCAGCATCCCTCACGATTATGAAATGGAGGCTGGAACGTCGGAGATTCTAGAAGCTTGCAACGAGTCTGAAATGTTGATAGAGACGGTAGATAATATAGAAGGAGAGAACAGCAATcagggtgaaaaatattatgtgaTAACTGAGGTGCATGAACAGCCAGTTAACCTGGTAGACTCTGCCGAGGCAAAGAAATTTGGAGCTGCTGATTCAACCGAACGGAATCAGCCTTGGAATGAACTCTGCAGAGTATGTGCCAACTCCAGTGATCATTTAATCCCAATTTTTGAAGGAGAAGGCATCGAACATGACCTCAGTAGCAAGATACACAGATATTTACCCATTCAGGTTTCCAGAGAAGACAGTCTTCCTTCACATCTTTGCTATCATTGTGCTTCTACATTACTAGCGTGGCACGAATTAACTGAAAGTTGTATAGATGCCGAGCAACGTCTTCTGCAAATGCAAAAAGaattgcaagaaaaagaacagACTATAACATTGGAAGACTCATTAAATGAGGAAAGTGCTGCTCCACCATCGGCAGAAACAAATCAAATAACTAAAACACAAATGCCAGCGGCGGGACTGAGGGTAAAAGGAGAATGTAATGAAGAGTCTACTACCAATGAGTCTGAAAGGTCCAGTAGTATCCAGATGCCATTCAAAGCATTCCTAGACATCCAGAGTATTTTTTGGAGGCCATACAAAAAATCAGAGCAGAAAATCAGTGGAAGTCATGTTAAAGAAGATGATACTGAATCAATCTGGATCACAGTAACAGACTCTACCTTTGATCAACCCACTGTAACATCTGACCCACTGTGCCTCAGTGATAATATGTTACAGCGAGACAATCGTGGTCATAATAGTCAGGGAGTGacaaaaaagttgaataaacCAGAAACAAATCAAACACCATCAAACGATAAAGATACgtcaaaaaaagaagcagaaaataAAGACTCACCAAAAGTTCCTCCAGCAAAAATGTTGACTGATATTCACAAGGCGCCAAAACCTCTTTTGGGTACCCAGGAAACTTATCAATGCCATGAGTGTGGAAAGTGTTTCAAGCTGAAAGATTCATTCCAAAGACACATGCGTATACATACAGACGAACGTCCTTTCACTTGCCACATTTGTGCTAAACAGTTTCGTGATTCTGGTGGTTTGTCTAGACATTTAAAAGACGTTCATGCtaaagtgaagaaattttccTGCGATATGTGTGGAAAGTCATTTGCGTCAAAAGCTACGAGAGAAGACCATCGACGCACTCATACAGGAGAACGACCGTACTTATGCAAGTCTTGTGGTAATACCTTCAGATCGAAGGCCTCACTTTATATACACAGCAAACGGCACACGAACGAGTTTCCGCATCCATGTTCCTATTGCCATAAAAAGTTTCGACGGAAGCAAGAAATGCTGGCTCATATTACGACACATACTGGGGAAAAGAATCATAGCTGTGAAATATGCTCAAAAAGAGCAGGCATTTTGATACCTTACGAAACTGCTAGTACAGACCCTGTATTTTCCATCCTACATCGATTCTGCGACAAAAGGAAAGTTACTGAAACATGCCGCACTTATTATGCTTCCAGGTTCCACCAAACAAGAACGAAATCCTTTGCCGTGTTTCGATTGGCTCGGAAGGAACTTATCTCCAGAAATCCTTCCCAGCAGCCGAAATCTAATCAAGTGGACTATGACAATCCGCAGATTATTTCTCTGCCTTTAGAAATATCGGATCAACCTAAAAGTTCAAGACTTGAACCAACAACTTCCGAAAAAAATAGTCATGCGCCTGATTCAAATGACATTCGTTCAATTTCCTCTTCCAAGCAAGAATGTGCCTCCATATGcgttgaaagaagaaagtcAACTCGATCTCATCATaggaatacaaaaaattcatactcTTGTGCAAAGTGCAAAAGAATATTCAAAAGGGAGTTTCATTTCAAGCGTCATGTAGCATCCTGTGGACGAAAACATGCAGAACCACAATTAGTTACtacagaaaaaacaacaacgcTGAGAAAGTGTGCCAAAGGATCAGACGAAGAGACCTGCAAAGATGTCGAAACAAATGAACCAGAGACTGACTGGGATTCATGTCAAACAGTGAAAACTGATACTGTTAAATCTTATCCCTGTAAGCACTGCAACTATTCTGCGGATACAAAAAAAGTATTAGCCTCACATAATCTAGAAGTTCATCCAGAAGCATTACAAGAAAAGCAAGTAAAAAAACCCCGAAGTATAGATAAGGAAGCGATAAAACGAGCACGCGTTGAAGCCAATGGTAAAGTGTACTACCATTGTAAGGATTGCGGGAAAAATCTTTATTCTCCGTACACCTTCTCATGGCATATTCGGATTCATACAGGAGAAAGACCTTATACTTGTCACTTATGCGGAAGACAGTTTCGGGTTAATCAAGGTCTTGCACGGCATCTACGTGAAACTCACGCAGgcataaaaaatttcccatgTGATATATGCGGCAGAATGTTTTCCACCAAACGTAATGTTCAAGATCATCGACGAATCCACACCGGAGAGAGACCCTTTGTATGCAAGACTTGTGGCAAATCGTTTAAACAAAAGGCCTCACTATTTGTTCACAACCGTACCCATACAGACTTTTTCCCATTCAAATGTAACTACTGTAATCAAGCCTTTCGTACTAGACCCCAGCTTGTGATTCACATCACTAAACATACCGGAGAGAAACCTCATGCCTGTGATATTTGTAATCGTCATTTTCGTATTAAGTACGAATTGAAGAGACATCGATTAGTGCATTTCGAAGAAAAGCCATGGCTCTGCACCGACTGCGGCCTTTCGTTTAGACAAAAACGATATTTAGTTAATCATAATAAGATTAATCACAATGCAAATCATAATTTACAACTAGAATAA
Protein Sequence: MSSIPHDYEMEAGTSEILEACNESEMLIETVDNIEGENSNQGEKYYVITEVHEQPVNLVDSAEAKKFGAADSTERNQPWNELCRVCANSSDHLIPIFEGEGIEHDLSSKIHRYLPIQVSREDSLPSHLCYHCASTLLAWHELTESCIDAEQRLLQMQKELQEKEQTITLEDSLNEESAAPPSAETNQITKTQMPAAGLRVKGECNEESTTNESERSSSIQMPFKAFLDIQSIFWRPYKKSEQKISGSHVKEDDTESIWITVTDSTFDQPTVTSDPLCLSDNMLQRDNRGHNSQGVTKKLNKPETNQTPSNDKDTSKKEAENKDSPKVPPAKMLTDIHKAPKPLLGTQETYQCHECGKCFKLKDSFQRHMRIHTDERPFTCHICAKQFRDSGGLSRHLKDVHAKVKKFSCDMCGKSFASKATREDHRRTHTGERPYLCKSCGNTFRSKASLYIHSKRHTNEFPHPCSYCHKKFRRKQEMLAHITTHTGEKNHSCEICSKRAGILIPYETASTDPVFSILHRFCDKRKVTETCRTYYASRFHQTRTKSFAVFRLARKELISRNPSQQPKSNQVDYDNPQIISLPLEISDQPKSSRLEPTTSEKNSHAPDSNDIRSISSSKQECASICVERRKSTRSHHRNTKNSYSCAKCKRIFKREFHFKRHVASCGRKHAEPQLVTTEKTTTLRKCAKGSDEETCKDVETNEPETDWDSCQTVKTDTVKSYPCKHCNYSADTKKVLASHNLEVHPEALQEKQVKKPRSIDKEAIKRARVEANGKVYYHCKDCGKNLYSPYTFSWHIRIHTGERPYTCHLCGRQFRVNQGLARHLRETHAGIKNFPCDICGRMFSTKRNVQDHRRIHTGERPFVCKTCGKSFKQKASLFVHNRTHTDFFPFKCNYCNQAFRTRPQLVIHITKHTGEKPHACDICNRHFRIKYELKRHRLVHFEEKPWLCTDCGLSFRQKRYLVNHNKINHNANHNLQLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -