Basic Information

Insect: Athalia cordata
Gene Symbol: -
Assembly: GCA_963932425.1
Location: OZ010627.1:24376760-24380801[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.97 80 4.0 2.7 1 23 361 383 361 383 0.90

2 19 0.062 5.2 7.8 1.9 2 23 417 438 416 438 0.95

3 19 1.1e-05 0.00088 19.6 3.9 1 23 483 505 483 505 0.97

4 19 0.0012 0.099 13.2 0.5 2 23 509 530 508 530 0.96

5 19 2.3e-05 0.0019 18.5 0.8 2 23 576 597 575 597 0.96

6 19 5.5e-06 0.00046 20.5 3.9 1 23 602 624 602 624 0.97

7 19 0.0019 0.16 12.5 0.6 1 21 630 650 630 654 0.91

8 19 0.0031 0.26 11.9 1.4 1 23 712 734 712 734 0.98

9 19 3.6e-05 0.003 18.0 3.8 1 23 765 787 765 787 0.97

10 19 0.00014 0.012 16.1 0.8 1 20 792 811 792 813 0.94

11 19 0.00096 0.08 13.5 0.6 2 23 824 845 824 845 0.97

12 19 0.00034 0.028 14.9 0.5 2 23 884 905 883 905 0.96

13 19 2.3e-05 0.0019 18.6 1.6 1 23 910 932 910 932 0.95

14 19 0.00079 0.066 13.7 4.0 1 23 938 960 938 960 0.97

15 19 4.1e-06 0.00034 20.9 0.4 1 23 976 998 976 998 0.95

16 19 3.3e-07 2.8e-05 24.4 0.6 1 23 1004 1026 1004 1026 0.99

17 19 3.6e-05 0.003 17.9 0.2 1 23 1032 1054 1032 1054 0.97

18 19 0.00013 0.011 16.2 4.1 1 23 1060 1082 1060 1082 0.96

19 19 0.0095 0.79 10.3 0.4 1 20 1088 1107 1088 1109 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.97	80	4.0	2.7	1	23	361	383	361	383	0.90
2	19	0.062	5.2	7.8	1.9	2	23	417	438	416	438	0.95
3	19	1.1e-05	0.00088	19.6	3.9	1	23	483	505	483	505	0.97
4	19	0.0012	0.099	13.2	0.5	2	23	509	530	508	530	0.96
5	19	2.3e-05	0.0019	18.5	0.8	2	23	576	597	575	597	0.96
6	19	5.5e-06	0.00046	20.5	3.9	1	23	602	624	602	624	0.97
7	19	0.0019	0.16	12.5	0.6	1	21	630	650	630	654	0.91
8	19	0.0031	0.26	11.9	1.4	1	23	712	734	712	734	0.98
9	19	3.6e-05	0.003	18.0	3.8	1	23	765	787	765	787	0.97
10	19	0.00014	0.012	16.1	0.8	1	20	792	811	792	813	0.94
11	19	0.00096	0.08	13.5	0.6	2	23	824	845	824	845	0.97
12	19	0.00034	0.028	14.9	0.5	2	23	884	905	883	905	0.96
13	19	2.3e-05	0.0019	18.6	1.6	1	23	910	932	910	932	0.95
14	19	0.00079	0.066	13.7	4.0	1	23	938	960	938	960	0.97
15	19	4.1e-06	0.00034	20.9	0.4	1	23	976	998	976	998	0.95
16	19	3.3e-07	2.8e-05	24.4	0.6	1	23	1004	1026	1004	1026	0.99
17	19	3.6e-05	0.003	17.9	0.2	1	23	1032	1054	1032	1054	0.97
18	19	0.00013	0.011	16.2	4.1	1	23	1060	1082	1060	1082	0.96
19	19	0.0095	0.79	10.3	0.4	1	20	1088	1107	1088	1109	0.89

Sequence Information

Coding Sequence: ATGGAGAGAAACACGGAAGATTTAAAGATTGTAGCCATCGCATTTCATGAAGAACACCTCAGCCTAACAGAGCCCGTCGATGATGGATCTGTCGCTCATGGGGCAACTAAACAAAACATGGACGCCGAGGAAGTAAATACGTCGGAAACTCCGCAAAATGAGGAGGATATACTAAACGCTGTAGAGATATGTCGAGTGTGTTTGCTCGAAAGTGTAGAAATGAAAGATCTCTTTCTGGTAGACGATGTTGTTTCATTGTCTAGCAAAGCTATGAGCTTCACCAACGCTAAGATGCTACCTGGAGATGGTTTGCCTGCACAGGTCTGTGCTTCCTGTGCAGCTAAATTGGATGCAGCCTACGAATTCAAGCTCCAAGTCGAGCAAGCGGATGGTGTTTTGAGAGAGAGATACATGTCATTGAATATTAAGGACGAATTATTCTTCAACGAGGTAGAAGTACACCTGGAAACAAATCAGAGTAGTGATAAAAGTGGCGAACAGTCAACGGATCTTAATATTCAACTTTGTCCGGAATCAACCCAAGACGACGAACTGAATGCTGCAACAGAAGAACCCCAACTACTTAAAGATGACTTGGCACTTCTGCAGGTTAAAAAACTTACAGAAGATCAAGAAAGTAATTTGGAAGTTAAAGAGATGTTGACGGGAGTCATAGAGAATCCTGAAACCGAACTGGAGATCACACAGCATGCCCATATGGATCCTGGCAGAATTGTTGCGCAGGAACATGGTTATGGAGCGCAGCTGAAATCCGAACCAGACCAGCATTTACTTTCGATAGAATCATCCGGAAAATACGGTCAACCAAGtggaaatgatgaaaatcagTTTGAGAATGTTGATCTAGAGCAGAGCGACAGAAAGCAATCAGTGGctcgaatagaaaaagagcAAATTTGCAAAGAATTGCCTCAGATCGAAACAAGGAAAAGTAAACGCAAGTCAGCTCGAAAAATCCCTATTGTTGATCATGACTCGGACGAAGACAATTACTTTGAGAATTTAAACTTGAGCTCTAGATTAAAACAGAGTCCACCAGATAAGGCTGAGAGCGTTTATTACATGTGTTACATTTGTGATAAACATTTTTTGGCTAAGGGCATTTTAAAAGAACACATGCACTCTCATGAAGAAGTGAGAAAAGTTATGTCTTTAGTGAAGGTGACTGAGAAAAGTCCAAAAGTTACGACCCCAGCAAAACATTGTCCGTCTGGTAAACAACCAAACAAATGTCCCCATTGCGGTAAagaatatttgtatataatttcgtaTAAGAAACATCTAAAACAACatgagaacgaaaaagaagaatcaaagGTTGAACCGATGCCATTGGAAGTATCATTTCACGAGGATGACAACACTCTCGATTTTGAAAACTCTGACAATAGTTATGATTCAGATCCATTATCCCAAGAGGGAAAACATACTTGTGAGAAGTGCAAGGAAGCTTTCAGCACGAAAAAAGCACTTCAAAAACATATGACTAAGCATGAAGCACTCAAGTGCAACATTTGCAATCAAGAATTTGGCGATTTGGATGCATTTAAAACTCACCAGACTCAACACGTGTCTGACGAAGTTTTGACAGCAGAAGGCTTAGAAGAAAATCTAAAGTATGTTTCCCAACTCTTAGAGAATACCCATGAGGATGAGGAAGTTCGTGTCGGCAGAAAAACCAGACATTCTGGAAACAAAGGCTTGCAATGTCCTAAATGCCCCATGGTTTACTCTCacaaaaaatctttattaCGGCACCTAGAAATTCATACAGGCATACAGTATGTTTGCAAATTATGCAGTCAACAATTCTCTCGGAAAGATCATCTGCGAAGACACATGGAACAGCATGGtagaataaaatcattcaattGTACTCAATGCAATAAGACGTTTGGAAATGAATTGACGTTACGAAATCATCTGATTGCAACCAATCACAAGACCATCATTCGTGGGGAAGAATATGATCCCAATAAACGTCCGAAGCGTGTAGCTGCGAAAGAAgcgcaaaaaattattgacaaaATCAAAACAGAAAACGATGAGGATGACAATAACAGCAGCGATGATCGAGAACAACCTCGAAAAAGATcatacgagaaaaaagaatatgaatgCGCCACATGCAACAGCAAATGTCCTTCTAAGCAGTCTTTAGCTAAGCACATGGAGATGCACATTAAAGACGAAAAAGGCGAAAAGCAAGTAAACCGCGGCTCGGATGATGACTCAGATTTTGACACAGGTTTAGAATGGCTCATAGACACTCATGAATGTCCAACTTGTAAGAAGAGATATAGTACAAAAAAATCTCTGCTACGACATCAACTACTGCATGAAGAGCCAAACTTTGAATGCGATATTTgcaatatgaaattttatcgaaaagaCAAATTGAAAGCACATTACGACAAATGTTCAGAGAAGAATCCAGACCAAGTCAGAAAGTGTAATATCTGCGGAGACAGCTTTGaaaacaataatttgttgAAGGAACACAGAGCCAAGCATGTCACAGAGGGTATTCTAACTGAGGAAGATTTAAGAGATATCGAACCACAGACTGATGAAAGAAGgcttggagaaaaaataaccagGAAAAGAAGAACTGATATTGTCGGACTTGAGTGTAGAGAGTGCAACAAGCTTTACACTTCACGAAAAGGATTACTGCGTCACATACAAGTCCATGAGGGTAAAAAGTATCTGTGCGATATTTGTCCAAAGAAATTTTACAGGCGAGAACATCTTAAAATACATGTGGCAAAGCACAACATGATTAAACCGCACAAATGCAATCGTTGCACTAAACGTTTTGCCAAAGAAGAACAACTAACCAATCATGTATCGAAACATGAccggaatttcaaaaaaaacaaggaaactGATAGCTCTAAAAGATTCCTATGCGAAATTTGTTCCAAGAGCTTCACCCAATCAACAACCCTCATTGCTCACCTCAGAGCCCATAATGGAATAAAGCCATATGTATGTGAAGTATGTTCTCGTCCTTTCACAACAAATGCATATCTCAAAATGCACATGAGAACTCATACTCAAGAAAGACCCTACATTTGCCAATACTGTTCACGAGCTTTTGCAAGGGCAGATACATTGGCAAATCACCTTACATCTCATACAGGGGAGGCAAAGTACCATTGCAAATATTGTCCGAAAAACTTCAGGCGATTGAAATCCTTAAAAGAACATGTGTTCATTCATACTGGTCAGAGGCCTTATGCCTGTCCAACCTGCGACCGAAGATTCAACAATAATGGAAGTCGGTATGCTCATAGTAAGAGAtgcaaacaaaatttattgcaaaACCAGAACAGGGGGCAAGAATCTGTGAATCAGGGGAGAATTCATGTGAATAACCCAATGCAAACTGTGAAACCCCAGAGTGTAAAAACAATCACAATCACTAGTCAAGCTGATAGTGTTACTGGGCAGCAAGTTATACAGCATCAAGAAATTCTCATGCCTCTAATCTTGCCATTGACGGTCACATTGGCTGATGTCGGTGAAGAAGTTATTCTACCTGAAGGCACAAAGATTTTTACAACCTCGTAA
Protein Sequence: MERNTEDLKIVAIAFHEEHLSLTEPVDDGSVAHGATKQNMDAEEVNTSETPQNEEDILNAVEICRVCLLESVEMKDLFLVDDVVSLSSKAMSFTNAKMLPGDGLPAQVCASCAAKLDAAYEFKLQVEQADGVLRERYMSLNIKDELFFNEVEVHLETNQSSDKSGEQSTDLNIQLCPESTQDDELNAATEEPQLLKDDLALLQVKKLTEDQESNLEVKEMLTGVIENPETELEITQHAHMDPGRIVAQEHGYGAQLKSEPDQHLLSIESSGKYGQPSGNDENQFENVDLEQSDRKQSVARIEKEQICKELPQIETRKSKRKSARKIPIVDHDSDEDNYFENLNLSSRLKQSPPDKAESVYYMCYICDKHFLAKGILKEHMHSHEEVRKVMSLVKVTEKSPKVTTPAKHCPSGKQPNKCPHCGKEYLYIISYKKHLKQHENEKEESKVEPMPLEVSFHEDDNTLDFENSDNSYDSDPLSQEGKHTCEKCKEAFSTKKALQKHMTKHEALKCNICNQEFGDLDAFKTHQTQHVSDEVLTAEGLEENLKYVSQLLENTHEDEEVRVGRKTRHSGNKGLQCPKCPMVYSHKKSLLRHLEIHTGIQYVCKLCSQQFSRKDHLRRHMEQHGRIKSFNCTQCNKTFGNELTLRNHLIATNHKTIIRGEEYDPNKRPKRVAAKEAQKIIDKIKTENDEDDNNSSDDREQPRKRSYEKKEYECATCNSKCPSKQSLAKHMEMHIKDEKGEKQVNRGSDDDSDFDTGLEWLIDTHECPTCKKRYSTKKSLLRHQLLHEEPNFECDICNMKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNNLLKEHRAKHVTEGILTEEDLRDIEPQTDERRLGEKITRKRRTDIVGLECRECNKLYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPHKCNRCTKRFAKEEQLTNHVSKHDRNFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQNRGQESVNQGRIHVNNPMQTVKPQSVKTITITSQADSVTGQQVIQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00174477;
90% Identity: iTF_00174477;
80% Identity: -