Basic Information

Insect: Athalia circularis
Gene Symbol: -
Assembly: GCA_963978495.1
Location: OZ021702.1:18767756-18772473[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.6e-05 0.0017 19.1 2.4 1 23 204 226 204 226 0.98

2 8 0.00031 0.033 15.1 0.4 1 23 257 280 257 280 0.93

3 8 8.8e-05 0.0095 16.8 2.6 1 23 380 402 380 402 0.97

4 8 1.2e-05 0.0013 19.5 0.1 1 23 408 430 408 430 0.98

5 8 2e-06 0.00021 22.0 1.8 1 23 436 458 436 458 0.98

6 8 4.5e-07 4.9e-05 24.0 1.9 1 23 464 486 464 486 0.99

7 8 4.7e-06 0.0005 20.8 1.0 1 23 492 514 492 514 0.98

8 8 4.5e-05 0.0048 17.7 0.6 1 23 520 542 520 542 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.6e-05	0.0017	19.1	2.4	1	23	204	226	204	226	0.98
2	8	0.00031	0.033	15.1	0.4	1	23	257	280	257	280	0.93
3	8	8.8e-05	0.0095	16.8	2.6	1	23	380	402	380	402	0.97
4	8	1.2e-05	0.0013	19.5	0.1	1	23	408	430	408	430	0.98
5	8	2e-06	0.00021	22.0	1.8	1	23	436	458	436	458	0.98
6	8	4.5e-07	4.9e-05	24.0	1.9	1	23	464	486	464	486	0.99
7	8	4.7e-06	0.0005	20.8	1.0	1	23	492	514	492	514	0.98
8	8	4.5e-05	0.0048	17.7	0.6	1	23	520	542	520	542	0.97

Sequence Information

Coding Sequence: ATGGCCCTGGAATCAAATGGTAGCAACGTCGTGTGGTTAAGCTCATCACGGCCTGATCAGATACAGCAGCACGTGATAAAGGAAGATCCACTACAAATCGAGACAGCTGAAGAGCAGCGTCAcctacaacaacaacagcacaGGTACCAACGAAGTTTGATTAAAATTCCAAACCAACAGAATCAACAAATTGGACAACCGGTCAAGTGTTCCATGTTCACTCAGACCGAACAAACCAATAGTTTTACACAAACAGAGCAGAGCAACTCCAGCTATAGCGATCAGCGACAGCAATCCACAATGTTTGACCCACAACAAATCCAACAACAGCAAGCTCCTCAAGGTCAGCAGtctcagcagcagcagcagtccCAGCAAATGTATGTGACTggaactgaaaaaaaggaggacaAGTCCCAGCCATCTGCTACGGCTGAATTTCCATTTTACTACAATGTCAACATGCTTCAGAAAGTTCAAACGAACGCAGTAAGCACAATTGGCGCGATTACAACTGATGATAAAGGCTGTTATCGGTTTGACGTGCAACCTGTTGGTTATAATACATTGCTGAATCAAATGAGCATAGCTGCAGCAACAAACGCAACGTTTAAATGTGACATTTGTGGACTAGTTTTTGGTCATATGAGTTTATTAAATCATCATAAAAGAATCCACAACACAACACCAAGCAACCTACAACAACAACCACAGCAAGTAGTCCAGGCGCCGACAACCGTTACAGTGGCAAGCACTCAGGATCGGCCTTACACTTGCGACGTGTGTGGTGCGTGCTTTGCTCTCCCCGGGGAATTGAAAAGTCACAAAACAAACATGCATCAAAAGcctaaaattcaaatttgtgAAGATTGCGGCAGCGATGAACCCTGCGAACATCATCCAACAAAAGTTAAGAAAACAATCAAACCAGGCCACCATCCCGTCAAACGGCGCGGTGTGACCAGTGTAACTAAATGCCACAAGTGCAATGGAACtggtattattttcatcgGCAAAGACGAGGATAAACTAAATTCCGGGATCAGTTCGCTCGCCAAGTGTGGTGGCTGCAAGGCGACAGGTCGAGTCACCATTGGAAGTGGAAAACAAAACAGTCAGAACCAGCCTGAAAAACCTTTCCATTGTAATGTTTGCGATGGGACGTTTTCTCGATATTCATCTCTATGGTCTCATAAGCGACTTCATTCTGGCGACAAACCATTCAAATGTGAAGTATGTGGTTTGGCATTTGCAAAAGCTGCGTATCTGAAAAATCACGGACGTGTTCATACTGGAGAAAAACCATTCAAGTGTACTGTTTGTGGAATGCAATTTTCACAGAGTCCgcatttaaaaaatcacgaaCGAATTCATTCAGGCGAACGACCTTATCAGTGTGAAGTTTGTGAAAAAACATTTGCAAGGCATTCTACTCTGTGGAATCACAGGAGGATTCATACTGGGGAAAAACCTTATCGATGTAATATTTGTGGTTCCGCATTCAATCAGGCTACGCATCTAAAAAATCACGCTAAAGTTCATACCGGTGAAAAACCACACAGATGCGACATTTGTGAGATTGGGTTCTCAGACCGTTTTGCATTAAAGCGACATCGCGCGATTCATGAAAAGTACGGTCAAACCGCACGAAATCAGAACAGCAATAATGCTAACAGTGCCCAACAAGCAAATACTAGTaatcagcagcaacagcaacaacagcagcagcagcagcagcaacaacaacagcagcagcagcagcaacaacaacaacagcaacaagcCCAACAACAAGGACCTCCAGCTCAGCAAGTGGTTGTTGTTAATTCTGCAACACCTGTGACAGTTAGTCAGGGTCAAGGTCAAGGTCAGAGTCAAGGTCAGGCAGTAATGTTAGACGAGGTTTACAAATGCCAGGTGGCCTTCCCAGAGCCGAAATGA
Protein Sequence: MALESNGSNVVWLSSSRPDQIQQHVIKEDPLQIETAEEQRHLQQQQHRYQRSLIKIPNQQNQQIGQPVKCSMFTQTEQTNSFTQTEQSNSSYSDQRQQSTMFDPQQIQQQQAPQGQQSQQQQQSQQMYVTGTEKKEDKSQPSATAEFPFYYNVNMLQKVQTNAVSTIGAITTDDKGCYRFDVQPVGYNTLLNQMSIAAATNATFKCDICGLVFGHMSLLNHHKRIHNTTPSNLQQQPQQVVQAPTTVTVASTQDRPYTCDVCGACFALPGELKSHKTNMHQKPKIQICEDCGSDEPCEHHPTKVKKTIKPGHHPVKRRGVTSVTKCHKCNGTGIIFIGKDEDKLNSGISSLAKCGGCKATGRVTIGSGKQNSQNQPEKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCEVCGLAFAKAAYLKNHGRVHTGEKPFKCTVCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNICGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTARNQNSNNANSAQQANTSNQQQQQQQQQQQQQQQQQQQQQQQQQQQAQQQGPPAQQVVVVNSATPVTVSQGQGQGQSQGQAVMLDEVYKCQVAFPEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01514338;
90% Identity: iTF_00175929;
80% Identity: -