Acir012225.1
Basic Information
- Insect
- Athalia circularis
- Gene Symbol
- drl
- Assembly
- GCA_963978495.1
- Location
- OZ021699.1:19803113-19806016[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.2 4.5e+02 2.1 3.2 2 23 312 333 311 333 0.79 2 18 0.011 1.1 10.3 1.6 1 23 339 361 339 361 0.86 3 18 0.015 1.7 9.7 1.2 1 23 375 397 375 397 0.92 4 18 0.0022 0.23 12.4 1.1 2 23 405 427 404 427 0.96 5 18 2.7e-06 0.00029 21.6 2.1 1 23 433 455 433 455 0.98 6 18 0.0012 0.13 13.2 3.1 1 23 461 483 461 483 0.97 7 18 5.3e-07 5.6e-05 23.8 2.0 1 23 489 511 489 511 0.99 8 18 0.69 74 4.6 0.8 2 20 523 541 522 542 0.92 9 18 0.034 3.6 8.7 2.5 1 23 564 586 564 586 0.97 10 18 0.0073 0.78 10.8 0.1 1 23 592 614 592 614 0.95 11 18 0.022 2.4 9.2 2.1 1 22 630 651 630 651 0.95 12 18 0.088 9.5 7.4 0.1 2 21 659 678 658 679 0.93 13 18 0.14 15 6.7 1.5 3 23 688 708 686 708 0.95 14 18 6.6e-07 7.1e-05 23.5 1.3 1 23 719 741 719 741 0.98 15 18 0.0074 0.8 10.7 2.4 1 23 747 769 747 769 0.98 16 18 0.00018 0.019 15.9 1.8 1 23 775 797 775 797 0.98 17 18 0.0038 0.4 11.7 0.9 1 23 803 825 803 825 0.97 18 18 3.5e-06 0.00037 21.2 1.7 1 23 831 854 831 854 0.98
Sequence Information
- Coding Sequence
- ATGAAGATAACGATTAAGGATGCAACGGGGGATCTAGTATCGATAAACATTAAGAGAGATGAAACCTTTGGAGAGCTCAACCAACGAATAAAAGAGGAATATGGACTGCACATCGATTTCAGTAATTTACAGGATGACGAACGTGTAGACCTAGATCAGAATATCCTCAACTACTTATACAgAAACAATGAGCAATCTCAGGAACTGAATAGAGAATTTCTcaatgaagaagagaaaatatatccCATAGAAACTGCTCTctattttgaagaaattttagAAGCATTGCCCGAAAGCTATGAACTAACAACATTAGATCCAGAGATAGAAGAAATAGAGGGAGAGACACTGGGAATTATTAAAGTTTCAAAACCTAAGGAGGGCACAGCATTTTCTGATGTAAAGTTTGAATTTACATCAGCATTTTGCAGACTTTGTGCGTCCCGATGCAATGACATGATTTACATATTTGGAACTAATGAtgattacaaaaatatattgaagAAGATCAAGTACTGCTTAGCTATTGAAGTAAGAAAGACGGATTTTCTGCCGAAGAAAGTATGTCATCCATGCTTGGAGAAACTAGAACTTTTTAGTCAATTCCAGAAGACTGTGAAACAGGCTGAGAAAAAGCTCATTCTATTAAGGGAAGGATTGCTGAACAATATAAGCAAAACAGAAGattattctcaaattttacaacttaatagaaaaaatgtagaaacaAATACCGAAACGACAACCACAGGCAATAAAATCCTGATAACAGATTCAATCTCAGAATCAAATGTTTGTAATGTTGTGAATGATAGTCAAATACCATGTTCATCAGTTGAACTAATGAAAGAAGATGGGATAAATAATACtgtggaaaatattttagtcAAAGAAGAAGCATTTGACAAACGAGAGGCTAATTGCAAAATGATAAGATGCCAAATTTGCCAAGAAACTTTCCAGACTGCTAAAAAATGTCACATACATTCTAGTATACATTCATTGCTGAATTACTATCCTTGTAGTCTCTGCAATAAAAGTTTTACTACTGAAGAAGACTGTAACGAACACAGCCTCGAGCATACAGAGCTGAGTAAAGGGTTTGAAAAGAAAGTCGCGACACATGTTTGTCTGGAATGTGGAAAAAGATTTGTGAGTGAAGGAAGACTGAAGTTTCATCAAATCTACCATGATCCAGCAGTTAAGTCATGCTACTGCGAAAAATGCAACAAAGTGATGGCATCAGAGTCTCTGCTGTATCAACATATGCTGACTGTACATACTCAGTACAAACAATACTGTTGCGACATATGTGGGAAGCAGTTTAGAGCTCAAGCACAGCTCGAGACTCATCAAAGAAAACATAATAACGATCGCCCCTTCGAATGCAgtacatgtaataaaaaattttactccaaTGACATACTAAGGCGTCACAAAAAGCTGCATCTGCCGGACAAACCTTACCAATGCGATCAATGTGGTAAACGATTCGATAGAAATAATACATTGACCAAGCATTTATTACGACATCAGGTGGAAGCTGGACAGTCAATGAAATGCTGTGTGTGCAAAAATTGcagacaaatattttttgataatgaGTCTGCGCAAACACATTTGGTAGATTGCAATATTACGGGAGTAGATAACGATAATCAAATACAAGAATTACATCTAAAAGAAATTTACAGATGCGAATTCTGTGATAAATTCTACACCGatattcaatttatgaaatatcaTAGGGCGAGCCACAACGAATCTATGGTTTATGTGTGCACTATCTGTAGTACGACATACGCGACTTACAATCAGGTGATAGCGCACAAACTAGCACATAGAAAATCGTCAAAAACTACAACTGAAGTAACAATTCCGAGATATTTTGTTTGCGAATACTGCGACAAACAGTTTCTACACTTTACGAACATGAATATACACAGACGCAGATGTTCCAGTAGCAAAACTTGGATGTGTCGATATTGCGGAGATGCATTTCAAAGTGCAAGAGAATTGTCAAGACATAAAAAAGGGGAAGATGGCAACGATACATGGTTTTGCAATGAATGTCATGTCACTTTCGGTTCAATCTGCGGTTTGGAAATTCATAGAGAAAATCATGGGCCCTCGAAgttgaaagacaaaaaaaaatattcatgctCATATTGTGAAAAGGCGTTTGCACAGAAAGCGCATCTAACTATTCACGTACGAAGTCACACGGGGGAGCGACCTTACAATTGTGATTTATGCAATAAGTCTTACAAGATAAAAACAGAAAGGGACAATCATCGGAGAACTCATACTGGAGAAAAACCGTTCAAATGTTCcatttgcgaaaaaaaatttgctaatACAGCGAGACTGAGAGAACATACGAGATTTCATTCAGAAAAACGGCCCTATAATTGTTCGTTCTGCAATCAGTCTTTCAAGAAAGCAAACGCAAGAAATGTTCATATAACTATTCACACCGGAGAGAAACCATACCAATGTGATATTTGCGGAACTAATTTCAGGAGGACAGGTGATATGCGCAAGCACAAACGGACTCAGCACGAAAAAAACATCACCTGA
- Protein Sequence
- MKITIKDATGDLVSINIKRDETFGELNQRIKEEYGLHIDFSNLQDDERVDLDQNILNYLYRNNEQSQELNREFLNEEEKIYPIETALYFEEILEALPESYELTTLDPEIEEIEGETLGIIKVSKPKEGTAFSDVKFEFTSAFCRLCASRCNDMIYIFGTNDDYKNILKKIKYCLAIEVRKTDFLPKKVCHPCLEKLELFSQFQKTVKQAEKKLILLREGLLNNISKTEDYSQILQLNRKNVETNTETTTTGNKILITDSISESNVCNVVNDSQIPCSSVELMKEDGINNTVENILVKEEAFDKREANCKMIRCQICQETFQTAKKCHIHSSIHSLLNYYPCSLCNKSFTTEEDCNEHSLEHTELSKGFEKKVATHVCLECGKRFVSEGRLKFHQIYHDPAVKSCYCEKCNKVMASESLLYQHMLTVHTQYKQYCCDICGKQFRAQAQLETHQRKHNNDRPFECSTCNKKFYSNDILRRHKKLHLPDKPYQCDQCGKRFDRNNTLTKHLLRHQVEAGQSMKCCVCKNCRQIFFDNESAQTHLVDCNITGVDNDNQIQELHLKEIYRCEFCDKFYTDIQFMKYHRASHNESMVYVCTICSTTYATYNQVIAHKLAHRKSSKTTTEVTIPRYFVCEYCDKQFLHFTNMNIHRRRCSSSKTWMCRYCGDAFQSARELSRHKKGEDGNDTWFCNECHVTFGSICGLEIHRENHGPSKLKDKKKYSCSYCEKAFAQKAHLTIHVRSHTGERPYNCDLCNKSYKIKTERDNHRRTHTGEKPFKCSICEKKFANTARLREHTRFHSEKRPYNCSFCNQSFKKANARNVHITIHTGEKPYQCDICGTNFRRTGDMRKHKRTQHEKNIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -