Acir007944.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Athalia circularis
Gene Symbol
ham
Assembly
GCA_963978495.1
Location
OZ021698.1:22852448-22874620[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.04 4.3 8.5 0.4 2 23 220 242 219 242 0.93
2 9 0.14 15 6.7 0.0 1 23 249 272 249 272 0.94
3 9 1.1e-09 1.2e-07 32.2 0.8 1 23 278 300 278 301 0.96
4 9 1.1e-06 0.00012 22.8 1.7 1 23 307 329 307 329 0.95
5 9 2.8e-05 0.003 18.4 5.0 1 23 335 357 335 357 0.99
6 9 3e-05 0.0032 18.3 0.6 2 21 365 384 364 385 0.95
7 9 6.5e-09 7e-07 29.8 1.2 1 23 717 739 717 739 0.99
8 9 3.4e-07 3.7e-05 24.4 1.7 1 23 745 768 745 768 0.97
9 9 9.6e-06 0.001 19.8 3.4 1 23 774 796 774 796 0.99

Sequence Information

Coding Sequence
ATGGACAGACAACATTACGACAAACAACCACTCCCATTGGTCAGGGAGGATGAACTCAAACCATGGGCGTATGAAAAACAAGATCGAAGAGACTACGCCCGTGCAGTTGACCTCTATCGCGGAGAGTACCGTGACATGGTGAAGCAGGAATCCCGGGAGTCAATGAAGGAGACGTCTCCCCGAGAGTGGATATCACCGGTTCCCGAGGTGGAAATCGGACGATCGCCGCTGAGTGGTCCGCTGGTCAGAGCGCGTCGAGACATCGCGAGGGGGTCGCGGTTCGGACCGTTCCTTGGAAAATGGGCCAGTGAACCTTTCAACCCTCATTACGCGTGGGAGGTACGCATCGCCGGTAATGGAGTCAGGGGGTGGCTCGACGCATCTCATGAAGCGAGCAATTGGCTCAAGTACGTGAGAAGCACGACGAGTCCGCACGCGGTGAATATGCGCCACGTTCTGATCGGTGGTCagATGGTATACGAAGCCATCCGAGACATAGCGGCCAGCGAAGAACTCCTCCTCGGTCTCAGAGAGCCACTTCAGCTGCAGGATATGCTCGGTGAAAATACCGCCGAGGATAGAAGCGACAGGGAAACCGCCTCTCAGCACAGTGAAACAATCGACGAGGACagagaggaggaagaagaaggtgACACGAGGTGCACCGTCTGCGACAAACCCTTTCAGGATATTGAATTACTCGACGGACATCTGGTCACCTGCCACAGGTATCCTGCTGAACAGTATAGGTGCGAGACGTGTCCAAGGGGATACGCATGGAGACCTTTACTCGTTCGTCACCGAGCGATAGTTCACGGAGACCTGAGAAAATACCCATGTGAAAATTGCCCGAAGGTGTTCACTGATCCCTCAAATCTCCAGCGCCACATTAGAACGCACCACGTTGGCGCCAGAAGTCACGCCTGTCCGGAGTGCGGAAAGACCTTCGCTACCAGTTCCGGTCTGAAACAACACACCCACATACACAGCAGCGTGAAACCCTTCCAATGCGAGGTCTGCTTCAAGGCCTACACCCAGTTCTCTAACCTCTGCAGACATAAACGAATGCACGCCAACTGTCGTACTCAGATAAAGTGCGGTAAATGTGGAAAGTCATTCAGTACCGTAACGGCGCTCACTAAGCATAAACGGTTCTGCGATTCGACCGCCGCAACCGGACCGCCAGGAGCCATGCCTCAGCTTCCTCCTTCCGGAACAAGTCCGTTCTTGGTTTACCCAAGACCTCCTGGATCGCTTCCTGGTTCCCTGTCGTTTTACCCACCAAATCTGATGGGTCCATATCCAGGAATATTTCCGAACGCATCGAACTTTATCAACAGCTCGTTACTTTTCCCACCGAAGATGGAAGAGCTCGAAAAGCGGTGCGAAAGTCCTAAAAAAGAGCGTTTCACACCTCCCCGCATTCCTTCCCACCACAATAAAGTTTCACCCTCAACTGCGGAAGAAGCAACCTCAACCTTCAGGCCGTCCCCGGCGAGACCTCCGGTTCAACCAACCCCTGAAAGTGACGAAGAGCCAACGTCGAAACTGAGGCAACAGAGAACTGAAAAACACTCCGAGGCAGAAGCGATGGACATATCGGGTGACCAGCCACTCGATCTTAGAGTTGAAACTCGTAGACATCAGACGCCCAGCATCACCGAAAGTCACAGTCCATCACCGGTACCAGTTGTTGAGGAGATTCCACCTGAACCCCCAAGAagagtaaaagaagaagaacgcgTCGAGGTCAAAGTCAAAGATCTCAGCCCAGCCCGCAGCATAGTTGAACAACCCCCCACGAATCCACCCCCTCACATGGCGTATCCTCGGCCGATTCACCCTATGTTCCTAGAAGCGATGTACCGCGCACCTTCAGGGACTTTCCCTGGTTTCCCAGGAGGACCGCCACCCGGTGGAGGGCCCGAATCAAGATTGCTACCGCTACCTCCACCCTTTGGACCAACCCGTAGTAGCTTTCCTTTTTTAGGACCACTAGCGAACGGGTTGAGCGGTGGTAGACCGGGTAGTTTTGATCTCCTTGCTCGTCCGCCACTCAGCGCGTTCCCAGGTATGAAGCCATTTCAAGAGGTGATATCgcatcaccatcaccaccatCACCATGCTCACGGTAAAATGAAAGATCGGTATTCGTGCAAATTTTGTGGCAAGGTATTTCCCAGATCAGCGAACTTGACAAGACACTTACGTACGCACACCGGCGAGCAACCTTACAAATGCAAATACTGCGAGAGGTCGTTCAGTATTTCTAGTAACCTTCAACGTCACGTTCGGAACATTCACAACAAAGAAAAACCATTCAAGTGTCCATTGTGCGAACGATGCTTCGGTCAACAGACTAACTTGGATCGCCATTTGAAGAAACACGAAGCCGACGATGGAAGTGGTGTAGTTTCAGTTGCCGATTCTCCCGGTAGCAGCAACGAGAATGAAAGGGAGGACACgtatttcgatgaaattcgtTCGTTCATGGGCAAAGTATCGGAAGGTGACGGTTACGGTATTCCGCACCCTTACCCAGCCTACCTACCTGGTCGTCTTCACGATCTTCACGAGccaaaaactgaaaatgaatacgacgacgacgacgatagcGAAGAGGGAAATGCGCCCCTAGAAGATGCCGACGCCATGTCGCCAATGGAACCAAAAGGATCGCCGCCTCCACCGTACGAGTTGGTATTGAGGGACAAACAGGAATTGCTCAACAATAATACGGCAGAGCCAGTGATAGAGATATCGACATAG
Protein Sequence
MDRQHYDKQPLPLVREDELKPWAYEKQDRRDYARAVDLYRGEYRDMVKQESRESMKETSPREWISPVPEVEIGRSPLSGPLVRARRDIARGSRFGPFLGKWASEPFNPHYAWEVRIAGNGVRGWLDASHEASNWLKYVRSTTSPHAVNMRHVLIGGQMVYEAIRDIAASEELLLGLREPLQLQDMLGENTAEDRSDRETASQHSETIDEDREEEEEGDTRCTVCDKPFQDIELLDGHLVTCHRYPAEQYRCETCPRGYAWRPLLVRHRAIVHGDLRKYPCENCPKVFTDPSNLQRHIRTHHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHANCRTQIKCGKCGKSFSTVTALTKHKRFCDSTAATGPPGAMPQLPPSGTSPFLVYPRPPGSLPGSLSFYPPNLMGPYPGIFPNASNFINSSLLFPPKMEELEKRCESPKKERFTPPRIPSHHNKVSPSTAEEATSTFRPSPARPPVQPTPESDEEPTSKLRQQRTEKHSEAEAMDISGDQPLDLRVETRRHQTPSITESHSPSPVPVVEEIPPEPPRRVKEEERVEVKVKDLSPARSIVEQPPTNPPPHMAYPRPIHPMFLEAMYRAPSGTFPGFPGGPPPGGGPESRLLPLPPPFGPTRSSFPFLGPLANGLSGGRPGSFDLLARPPLSAFPGMKPFQEVISHHHHHHHHAHGKMKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHEADDGSGVVSVADSPGSSNENEREDTYFDEIRSFMGKVSEGDGYGIPHPYPAYLPGRLHDLHEPKTENEYDDDDDSEEGNAPLEDADAMSPMEPKGSPPPPYELVLRDKQELLNNNTAEPVIEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01414411;
90% Identity
iTF_00175241;
80% Identity
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