Acir017312.1
Basic Information
- Insect
- Athalia circularis
- Gene Symbol
- Snai1
- Assembly
- GCA_963978495.1
- Location
- OZ021701.1:13118333-13121565[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.3 6.8e+02 1.5 0.2 2 13 64 75 63 80 0.69 2 14 7.1 7.6e+02 1.4 0.0 1 23 234 261 234 261 0.87 3 14 0.0016 0.17 12.9 0.2 1 23 266 288 266 288 0.95 4 14 2.7e-05 0.0029 18.4 1.2 1 23 296 318 296 318 0.98 5 14 6e-06 0.00064 20.5 0.2 2 23 326 347 325 347 0.97 6 14 2e-06 0.00021 22.0 0.8 1 23 353 375 353 375 0.99 7 14 3.4e-05 0.0036 18.1 2.2 1 23 382 404 382 404 0.98 8 14 4.4e-06 0.00047 20.9 0.6 1 23 410 432 410 432 0.96 9 14 6.2e-06 0.00067 20.4 0.1 1 23 438 460 438 460 0.98 10 14 6.2e-07 6.7e-05 23.6 1.2 1 23 466 489 466 489 0.96 11 14 2.4e-06 0.00026 21.7 0.6 1 23 495 518 495 518 0.96 12 14 2.1e-06 0.00023 21.9 2.5 1 23 524 546 524 546 0.99 13 14 8.1e-05 0.0086 16.9 0.4 1 23 552 574 552 574 0.94 14 14 0.00033 0.035 15.0 0.2 1 23 580 604 580 604 0.94
Sequence Information
- Coding Sequence
- ATGACTGCCGACGCAGAAAAAGATTGTACGCATTGCTTGATCTGCAACAGCAAAGTTGGAGTATCGACAAGAAATAGCGTTAAAATCTTTGGCTCAACTTCTGTTGCAACAACAGAAAAACCGCTAGTGGATATTATATGTTCCGTACTAGATGTAGAATTAAATAAAGAAAGTGTACGTTCCTTGGTTGTCTGCAAAAAATgcttcaaattattcaatgaggTCGACGAATTGGAAAGTAGACTGGCAGAAATAAAACTAGAAATATACACAAACTATAAAAGAACGGCTCAGAAGTTGGCCAATGTGGTTCACcaagatgaagaagaatacAATGACCACGATTACGTGGAAAACCTGGACATACAAGCCTCAGAATCACCTGGAACTCCAAAATTCAAACAgaaagttaagaaaaaaatcaacaacacTCCAAAAGTTGTCACCGACGATACCCCAGATAAGAACGTATTTTTGGAGCACTATCATTTACAGGAAGAGGAAGCAGCCAATAGTCAGGCAGAGAATATGGAAAACATAGAATTACTTGATGAAGACATAAGTAATATGTACATCAAAGTTGAAACTGAAGCCAATACCGAGGATTTGGAAGCAAGAAAATCCAATGCAAAGAAAAGTAAAGTTAATGTGAAGACGGAAACCGTTCGAGAACAGCTGGTAGAGCGAGATGGGTCAATGTATACTTGTTTGCTATGTCCtaacgaagaggaaaaagtagTAGGCGATGCAAAAGCAATCACAACGCATTTAAAAACTGTCCACGATGCGCGTTTGTACATCTGCGACATATGCAGTATGGAATttagaaagagaaatgaaCTTTCCGTTCACCTAGACGATCACGTTGCCAATGAAGAGGGAGACTTTCAGTGCGAAGTTTGCAACAGAATATTCAGTAACTTACGACTATTCAGAATTCACAAAAGGATTCACTACCCACAAGCAAAATCTTGGCCATGTGAAACCTGTGGTAAGAGATACAGTTCCAGGAATTTGTTAGAGGAACATATCAACACGCACACTGGCGTACGACCATACGTCTGTGAAACTTGCGGCAAAGATTTCGCATCAAAGTATACTTACAAGGCTCACGTTAAGACGCACGAAGTGCGACCAAGACCTTTCGAATGCAGCCAATGCAACAAGACTTTTTTGAGTCAGCAAAACTTGAATCAACACGAAAGAACGCACAATGGTATAAAAGAGTACGTTTGCCATCAATGCGGCAAAGCGTTTGGTTCCCCGCATAACCTCGAAGTTCACAACATAGTTCATACCGGTTACAAGCCATACATATGCAGAATTTGCGGTAAGGCATTTGCGCGTAAAGCTGAGATAAGAGATCACGAACGGACTCATACCGGAGAAAAGCCCTATCAATGTGAATTCTGCGGAGCAACATTTAGTCAAAGATCGAATCTCCAATCTCACAAGCGCGCGACGCACTACAACGATAAAAGATATAAGTGCAACGATTGCGGTAAAGGATTTAAAAGACGTAGACTTTTGGATTACCACATAAAAGCTGCTCACACAGGAGAGAGACCATTCAAATGCCCGACGTGCACCGCGACATTTGTCTACCCGGAGCACTTCAAGAAACACATGCGTATTCATACAGGTGAAAAGCCGTATCTGTGCGAAGTATGTGGAAAAGCATTTAACAGCAGAGACAACAGGAACGCTCACCGGTTTATACACAGCGATAAAAAACCCTACGAATGTTTGGTGTGCGGAATGGGATTTATGAGAAAACCTCTGCTCTATACTCACATGCAAACCCaaggtCATTTGAACGATACAATCGTTGTCAATCAGCCGCGATTGACTACCGAAGATGATCAGGTAATCGCGATACCCGATGGGGATGTTGAACTTTTGATGGAAGGCGCGGACAATGAACAGGAGACGGAACTGTACATAACCGATTTAAAAGATCACGTAATTATACAAGACGGAGATCAGATATACCAGGAAGATAGCGTCCTAGGTATTCCATCGGAAGAAACAATCGCGGAAGAAGACGTCGATCATCTCGTCGTTGACGGCCAGATTAACTTCACTGAAAATGAAGTAATGGGATGTAAAGCTGAAGATTCCGAACACGTAGAAGAAGTTTATTATAACGACAGCGAAGATGGTTCGGCAATAGTTGTACCGACCACATCACATTACGAAGAAATCGTGGGGGACAAAAACTCAGTACGATTGGTACAGATAAGAATTCCAGCTTCCGCTACGCAGGACGGAAGAAATTGGTTAAATTTAGTACAAACTAGTGAAAACACATGA
- Protein Sequence
- MTADAEKDCTHCLICNSKVGVSTRNSVKIFGSTSVATTEKPLVDIICSVLDVELNKESVRSLVVCKKCFKLFNEVDELESRLAEIKLEIYTNYKRTAQKLANVVHQDEEEYNDHDYVENLDIQASESPGTPKFKQKVKKKINNTPKVVTDDTPDKNVFLEHYHLQEEEAANSQAENMENIELLDEDISNMYIKVETEANTEDLEARKSNAKKSKVNVKTETVREQLVERDGSMYTCLLCPNEEEKVVGDAKAITTHLKTVHDARLYICDICSMEFRKRNELSVHLDDHVANEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQAKSWPCETCGKRYSSRNLLEEHINTHTGVRPYVCETCGKDFASKYTYKAHVKTHEVRPRPFECSQCNKTFLSQQNLNQHERTHNGIKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCNDCGKGFKRRRLLDYHIKAAHTGERPFKCPTCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYTHMQTQGHLNDTIVVNQPRLTTEDDQVIAIPDGDVELLMEGADNEQETELYITDLKDHVIIQDGDQIYQEDSVLGIPSEETIAEEDVDHLVVDGQINFTENEVMGCKAEDSEHVEEVYYNDSEDGSAIVVPTTSHYEEIVGDKNSVRLVQIRIPASATQDGRNWLNLVQTSENT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00175229;
- 90% Identity
- iTF_00175229;
- 80% Identity
- -