Basic Information

Insect: Atethmia centrago
Gene Symbol: -
Assembly: GCA_905333075.2
Location: HG995369.1:28043983-28050624[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.02 3.1 10.2 1.9 1 23 202 224 202 224 0.97

2 10 0.00038 0.058 15.6 1.1 2 20 253 271 252 273 0.92

3 10 0.00011 0.018 17.3 0.1 2 23 304 326 303 326 0.96

4 10 4.3 6.7e+02 2.9 0.4 2 12 346 356 345 361 0.87

5 10 0.21 32 7.0 0.9 1 23 376 399 376 399 0.92

6 10 0.034 5.3 9.5 0.5 1 23 418 440 418 440 0.95

7 10 0.00041 0.064 15.5 3.5 1 23 480 503 480 503 0.94

8 10 0.00088 0.14 14.5 4.1 2 23 543 565 543 565 0.97

9 10 0.0011 0.17 14.2 0.6 1 23 615 638 615 638 0.97

10 10 0.0019 0.29 13.5 0.2 1 23 690 712 690 712 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.02	3.1	10.2	1.9	1	23	202	224	202	224	0.97
2	10	0.00038	0.058	15.6	1.1	2	20	253	271	252	273	0.92
3	10	0.00011	0.018	17.3	0.1	2	23	304	326	303	326	0.96
4	10	4.3	6.7e+02	2.9	0.4	2	12	346	356	345	361	0.87
5	10	0.21	32	7.0	0.9	1	23	376	399	376	399	0.92
6	10	0.034	5.3	9.5	0.5	1	23	418	440	418	440	0.95
7	10	0.00041	0.064	15.5	3.5	1	23	480	503	480	503	0.94
8	10	0.00088	0.14	14.5	4.1	2	23	543	565	543	565	0.97
9	10	0.0011	0.17	14.2	0.6	1	23	615	638	615	638	0.97
10	10	0.0019	0.29	13.5	0.2	1	23	690	712	690	712	0.97

Sequence Information

Coding Sequence: ATGGCCCTCAAGCTTGGAAAATGTAGGCTCTGCCTCAAGCTTGGCGACTTTTACTCCATCTTTACCGTCGACAATGCTTTGCAGCTCGCGGAGATGGCAATGGAATGCGCCCAGGTGAAAATATACGAAGGTGATGGGCTGCCTGACAAGGTGTGCTCGGAGTGCATACAGAAGCTCAGCAGCGCGCACATCTTCAAACAGCAGTGTGAGCGAGCTGACCAGGAGCTACGCCGCAACTATGTGCCTCCTCCCGGATTCAGCATCAGTCCGCCGCCACCCAACAGACAGAGCAGCGATTCCGCGTTTTCAAATCATACTGACAACTCTAACTTGACGAAACCCCCGTCTTCTATCGAAGAGAAAGTAACCCCCGCCACGAGAACCCGGAAACGTAGCGCGGACAGCGTCGACAATGCATCCACTGGTGGCGCGTCCAGCGACTACAGACCCAGCGGCTCCAAACGCGTCGAGGAACTCAAACGCAGCCACAAGCGACCCAGAAGACTGTCGGGACACATCTCGCAACTAGATTCAGATTACGAAGATAACAGCGCCTCGTACTTACCCGATACCGACTCCGACGAGCCCTTACTTAAAAGTAGCTTCAATTGCGATCAATGCCCCAAACATTTTCTATCCCAAAGAAGCCTCGGTGTCCACAAGAGGGTACACGACAAAAAAGAAAGTCTAGGCGAAAACGCCGTCGTTGATATACCGCAGCAGACAGAGGACGCGACCGACGTAGAAGACAAATTAAACTGCGACAAATGTGGCAAGACATTCAAGTTAAAGATCATGCTGAAACGTCACCACGAAGTATGCGGGAAGACTACTAGTCCCGTTAAGACCCCTCAGAAAGAGTTGCTCGTCTCTTTAGAACCGATCGACGGCATGAAGAACCGGAACATTGTGTGCGAAATGTGCTCGGCTAAGTTCAAGACTATTGAAAATTTGGCAAAGCATATGAAGGTGGTTCATGCTGCAGTCTTGAAAAAAGAAGATCTTGTTAAACGGGAAAATGGAAAGGTGACAGTTCCCTGCATGTACTGCAAGAAGCACTTCGATGATTACTATGTTCACAGTGCGCATTTCAACAAGTGTCCGAAAAGGGATGACTCTGTGCCGTATGAGTGTCCCATTTGCAAGAAGGTGATGTTAAGAAAGAACTCTTATTTTTTACATCTCAAGAACATGCACTTTGAGCCTCGGATGTCGCCGAAGAGTTCGGTGGAGCCTGAATCACAGGAGTACCATGAGTGTAGGATGTGCTTCAAGAAGCTTCCCTCGCAAGAGTTGCTGATCACGCATCTGGCGGCGCACATGTCGAATATCGATGACAATGATGGTGGAGCCGACAACGAATCTAGAGCAAGCACCATAGACGACACCGCGTCTATCCAATCAGTACATAGCCAATCTCGCACTCCCACTGGTCAATTTAACTGTCCAACTTGTAACAAAGAGTTCAAATACAAGAAAGCTCTTCAGACACACGAGGCTAGATGTCATTCAGAAGTACCTGTGCAAGTGAAGATTGAGCCACCTGATAAGGCATCGACGAGTCTCTTAAGCGAGACGGCCTATAGGCAGACTGAGTCGGATTCTAGTCAAGAAGAGGACGACAACACGTGTGATATCTGTGAGAAACAGTTCTCGTACCGCCGGCTCCTCCTCCACCACAAGCGGACCAAGCACAACATGAGCTCGGGACACAAGCGCGCCAAAATCTACCTCAAAGACTGCTCCGTGCGCTGCCTCATCTGCGACCTCGACATGAAGGTCGGCGCGATCAACGAACACAACCAGACACATATCTCAAAGAACATGAAGCCTAGAAACCTGTACACCTGCGCCGAGTGCGAGGATACCTTCAAGAGCTGTTCTGCTCTCGCAAACCATATAAAGCTGATTCACAGACTAAAACAGAAACGGATCGAAGATACCGTGAACCCGTCGGATTTTTGTGAAGTCGTTGTGGCAAAAGCGGAACCCCTGGACTGGATCCAGAGTCGCAACGACTTTGGTGAGGTTCCGGGCGACAGCAAGCCGTTAGTAGATCTTAGCGGCTTCAACTGTCCCATCTGTAACAAGAAGATGCCGACTCTCATATCTTTGAAGAGGCACGTCAACTGGCACTCCAATGTAGGCAATAATATTGAGAAGAAGCACGAGTGTTCCGTCTGTAAAGAGacttgtataataccgtaa
Protein Sequence: MALKLGKCRLCLKLGDFYSIFTVDNALQLAEMAMECAQVKIYEGDGLPDKVCSECIQKLSSAHIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSNHTDNSNLTKPPSSIEEKVTPATRTRKRSADSVDNASTGGASSDYRPSGSKRVEELKRSHKRPRRLSGHISQLDSDYEDNSASYLPDTDSDEPLLKSSFNCDQCPKHFLSQRSLGVHKRVHDKKESLGENAVVDIPQQTEDATDVEDKLNCDKCGKTFKLKIMLKRHHEVCGKTTSPVKTPQKELLVSLEPIDGMKNRNIVCEMCSAKFKTIENLAKHMKVVHAAVLKKEDLVKRENGKVTVPCMYCKKHFDDYYVHSAHFNKCPKRDDSVPYECPICKKVMLRKNSYFLHLKNMHFEPRMSPKSSVEPESQEYHECRMCFKKLPSQELLITHLAAHMSNIDDNDGGADNESRASTIDDTASIQSVHSQSRTPTGQFNCPTCNKEFKYKKALQTHEARCHSEVPVQVKIEPPDKASTSLLSETAYRQTESDSSQEEDDNTCDICEKQFSYRRLLLHHKRTKHNMSSGHKRAKIYLKDCSVRCLICDLDMKVGAINEHNQTHISKNMKPRNLYTCAECEDTFKSCSALANHIKLIHRLKQKRIEDTVNPSDFCEVVVAKAEPLDWIQSRNDFGEVPGDSKPLVDLSGFNCPICNKKMPTLISLKRHVNWHSNVGNNIEKKHECSVCKETCIIP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00112016;
90% Identity: iTF_01526494; iTF_00374626;
80% Identity: -