Basic Information

Insect: Atethmia centrago
Gene Symbol: -
Assembly: GCA_905333075.2
Location: HG995393.1:10672429-10692340[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0074 1.1 11.6 1.0 1 23 375 397 375 397 0.98

2 11 0.004 0.62 12.4 8.8 1 23 404 426 404 427 0.94

3 11 0.43 66 6.0 3.2 1 23 431 453 431 453 0.97

4 11 0.12 18 7.8 2.0 1 23 458 481 458 481 0.97

5 11 0.0043 0.67 12.3 0.2 1 23 485 508 485 508 0.94

6 11 1.7 2.7e+02 4.1 0.5 3 21 522 540 521 545 0.91

7 11 2.5 3.9e+02 3.6 0.3 2 23 601 623 600 623 0.94

8 11 0.013 2 10.8 0.6 2 20 639 657 638 660 0.91

9 11 3.1e-05 0.0048 19.1 1.4 1 23 666 688 666 688 0.99

10 11 5.4e-05 0.0084 18.3 4.5 1 23 695 717 695 717 0.97

11 11 4.5e-05 0.0069 18.5 1.3 1 23 723 746 723 746 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0074	1.1	11.6	1.0	1	23	375	397	375	397	0.98
2	11	0.004	0.62	12.4	8.8	1	23	404	426	404	427	0.94
3	11	0.43	66	6.0	3.2	1	23	431	453	431	453	0.97
4	11	0.12	18	7.8	2.0	1	23	458	481	458	481	0.97
5	11	0.0043	0.67	12.3	0.2	1	23	485	508	485	508	0.94
6	11	1.7	2.7e+02	4.1	0.5	3	21	522	540	521	545	0.91
7	11	2.5	3.9e+02	3.6	0.3	2	23	601	623	600	623	0.94
8	11	0.013	2	10.8	0.6	2	20	639	657	638	660	0.91
9	11	3.1e-05	0.0048	19.1	1.4	1	23	666	688	666	688	0.99
10	11	5.4e-05	0.0084	18.3	4.5	1	23	695	717	695	717	0.97
11	11	4.5e-05	0.0069	18.5	1.3	1	23	723	746	723	746	0.95

Sequence Information

Coding Sequence: atgAGGTGTTGTGTGCCGAACTGCAAGAATGATTCGCGACACATATCCAAATCACAGGGAATCACGTTCCATGTCTTTCCCAATGAGTCATCTCTCCGTAAATCCTGGCTCAAGGCCCTTGGTAAAGAATCTTGGGAACCGAGGGAAAGGAGTGCAGTGTGCTCCGAGCATTTTTTGTGTGAAGACTTGTATGAGACTAAGAGTGGGCTACGGAAGGTCAGGGCTGGGGCCGTGCCTTTGATTGTCCaggATTCCTCAAACTGTGATTATGGAGAACCTGCCAGTTTGAAGGCTTGCAGAATATGCCTAGTAATGGATGTGAAGTTAGTTCCAATAAGAATCTATAAACTGGAACAAGCTTATGAAAATCTCACAGGAATATCATTATGTGAAGAAGACAAACTACCGCAGAAGCTATGTGTGGAGTGCGTACAACGGTTAATGAACTGCAGTCGATTCAGGCTCAAGAGTTTAAGAGCTAACTCACTCATGTTAGAAGTTATTAAGAAACAGGACtgtTTAACTGttcaaaacataaaaacaataaaccgATTAAATAACCAATTAACATCAACGTTATCACCAAAACATTTAGAAGTAAACCACTACGATTCCTACATCGAATATGAAGACCAACCAATAACAATTCAGGATAAATCGTCCCCAACATGCAATGTAGATATCAAAACGGAAAACGAAATTTTTCTCACGGAAGATATCACAGACAAAAACGAAGACGGACTTAACGACGACGGACTTAACGATCACGGAAGTAACGACGGCGGAATTACGGATGTTTTGAACGATAAAGACGACATATCTGAAAAAGAATATGTGTTATCTGAAAAAGATAACTATTCTTCCGATGATAGTCTTCCTTTAGAAAAATGTAAGgcgaaaaaaacaagaaaaagaaaggagaaagaaaaaaaaccggTTAAAACCGTCAAGAGGGTTAAAAAGATAAAAGATCCCACGGAGCCAAAGATTGATAGACGGAGAAAACCGTTTTTGAACGATGATTTAAATGAAACTCTTTTTACGATCGCTGATTTGACATTTGAAGAGCAAATCGCTGAGATAGTGAAAAGGCAGGATAGTTCGAATTATAAGAATTCTGTTTTTAAATGTACTGAGTGTTTTAAAGGGTTTCTGGACGAAGATGCTTATAATAGCCATATGACTCGGCATACAGATCAATGCGGCGAACACGAATGTGAGATCTGCAAGACGCACTTCAAACACCCGCACGCGCTCCGAAAACATATAACAGCGCACCACACACAAAGATTCAGCTGTAAACAATGCACCTACGTCACAACCCATAGACAAACGGCCAGGCTTCACGAGCGGTGGCATAAGGGCACTAAGTATAGGTGTCCGCATTGTCAAGATGAGTTCGTTAAGTTCACCACGTACATGGGCCACATCCGAATCAAACACCCCTCGGACTTCGTGTGTGAGCTGTGCGGGTATTCCTTCGTCAGCGCTAAGGGCATAGAGTTGCATAAGAAGCTTAAACATCGGCTAGAGAATGCACAGATACCAGAAGATGGTCCATTATGCGAGCTGTGTAACGTTAGGTTCGTGTCATCTGAGGCTCACAAACGACATCTCAGTGTTTCAGCCAGACATAATACAGGTACTGACAAAGATTCAAGAGAATCTAACAAGCCCAAAAAGGGCAGGAAATCGAAAGAATGCAAGGAGCTTGAACGAAGGGCACGAGAGAAGGACAAAGACTCTGATGAAAAGAGACGGATATATCCCAGTCAGATGCGCAAGGCTGAAGGACCGATACCGTGTGAACAGTGTGGCGTTCAACTAGAAGATTCTCGGGCGTACCACGGCCACTTCAGACGAATGCATCCGGACAAGAATCGAACGAACTATCCTTCTATGAAGTCGCCCTGCATGTGCGAAGTTTGTGGGAGAATGTTCCAAAGTTACGCCCTCCTAAAGGATCATACCTGGGTGCACACCGGGGAACGTCCATTCAAGTGTGACTCTTGCGGCAAGTCATTTAGGATGAAGCAGCGGCTCGTGGCGCACAGGCGGGTGCACAGCCAAGTGCGCGCCAGCTACGTGTGCGCGCTGTGCGGGAAGCACTTCTCGACGCACAGCAACCGGCAGAGGCACATGTTTatcCACACCGGTCTAAAACCGTTCAAATGCGAGATGTGTGGTAAAGGATTCAAACACGCGAGTGAGAAGCGAGCTCACATAACATACGTACATCTTAAGAAGCCGTGGCCGAAGCGCGCCAGAGGGAAGCGAAGACCTGATACTAGACAGGGCCAGATATCCCAAGACCCGGACATGGACATGCAGGGCGCCATGTGGCCCCCGTGCGACCCCAAGATGGGGGAAATGGGGCCCATGATTGAAGACAAACCCGTTTACTATAACTTGAAGATTTAA
Protein Sequence: MRCCVPNCKNDSRHISKSQGITFHVFPNESSLRKSWLKALGKESWEPRERSAVCSEHFLCEDLYETKSGLRKVRAGAVPLIVQDSSNCDYGEPASLKACRICLVMDVKLVPIRIYKLEQAYENLTGISLCEEDKLPQKLCVECVQRLMNCSRFRLKSLRANSLMLEVIKKQDCLTVQNIKTINRLNNQLTSTLSPKHLEVNHYDSYIEYEDQPITIQDKSSPTCNVDIKTENEIFLTEDITDKNEDGLNDDGLNDHGSNDGGITDVLNDKDDISEKEYVLSEKDNYSSDDSLPLEKCKAKKTRKRKEKEKKPVKTVKRVKKIKDPTEPKIDRRRKPFLNDDLNETLFTIADLTFEEQIAEIVKRQDSSNYKNSVFKCTECFKGFLDEDAYNSHMTRHTDQCGEHECEICKTHFKHPHALRKHITAHHTQRFSCKQCTYVTTHRQTARLHERWHKGTKYRCPHCQDEFVKFTTYMGHIRIKHPSDFVCELCGYSFVSAKGIELHKKLKHRLENAQIPEDGPLCELCNVRFVSSEAHKRHLSVSARHNTGTDKDSRESNKPKKGRKSKECKELERRAREKDKDSDEKRRIYPSQMRKAEGPIPCEQCGVQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHTWVHTGERPFKCDSCGKSFRMKQRLVAHRRVHSQVRASYVCALCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHITYVHLKKPWPKRARGKRRPDTRQGQISQDPDMDMQGAMWPPCDPKMGEMGPMIEDKPVYYNLKI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00038854;
90% Identity: iTF_00746209;
80% Identity: iTF_00173033;