Acen058070.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- -
- Assembly
- GCA_905333075.2
- Location
- HG995396.1:8364507-8373066[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.1 1.8e+02 4.7 4.8 1 23 326 347 326 347 0.98 2 9 0.001 0.16 14.3 1.1 2 23 374 396 373 396 0.92 3 9 3.1e-05 0.0049 19.0 0.6 1 23 417 439 417 439 0.98 4 9 0.078 12 8.3 0.4 1 23 443 466 443 466 0.93 5 9 0.049 7.5 9.0 1.0 2 20 472 490 471 494 0.80 6 9 0.015 2.3 10.6 1.3 1 21 500 520 500 523 0.90 7 9 6.4e-05 0.0099 18.1 4.4 1 23 530 553 530 553 0.98 8 9 0.00018 0.028 16.7 2.2 2 23 560 581 559 581 0.97 9 9 2.6e-06 0.0004 22.5 0.4 1 23 587 609 587 609 0.98
Sequence Information
- Coding Sequence
- atgtttTCTACAAATAATAACACGGAGGTTGAAGAAGTTGATGAAACAATGTATGGACAATGCCGCTGTTGTATGGCTAATGGACAGCACAGAGATGTGACGAAAGAATACTATTACAACAATATAAAAGAAGTTTACAAAGATATTTTCCtggaatgttttaatttatcaTTAACTCCACACAATCGTATAAGTTCCCTAATATGTGAGAACTGCGTGCATCGCCTCCGTGATGCGACCAGTTTCCGTATGATGGTGGCTGCCACTGAGGAGCAGCTACTCAATGCGGTCATTTTTAAGAGCGATCCGGACAATGACACTGAATTTGTTGATGGTCCACAAAACTTTACAACCGAAATCAAAATTGAAAGTGAAGCAGATAATATTGAAATCGAGCCGGGTAACTTACAAGATAGTTTGGAAGGCTGTAAAGataatgaacgaatgaatgatgATGAACGGAGGAATTATGAACGTATGATTGAACAACGAATGAATGAAGACAATGATGGTTGGTCCAGTGAGTCTAGTGAAACTGAGCTTGTGATTGATGAGACAAGAGACAATGGATACACAGTCTCCGAAGATTGTGATACTGATGACGATGTTGATGGTGTTGGCGTTGATGATTGTGAAAGTACCTTCAGCTCTTTAACAATGAGTACCACTAGTGCTGTAGATGACGAGCCATGTGAAATAATAGAAGGAGAACCAAAGTTGTTGGCTCGCTTCCCTACATTCGCTCCTCAGCCTCTGCCTAAACGGAGTGAACTGACCAAGATATGCCCCGTTTATGATGAGCATTTGAAAAAACTTGAAGATAAAATAGTGGAACCAAAATCATTAGAATGGTATTTCAAGGTTCCCGACTTAAAAGAGACATTAATGTCAGACAAGCAAGCTCTCGCTGTTAACGCGACCACTCTATTCGAGTACAGCAACGCAACTGCCTTCAAAACAAAAATGAGGAACGGATACCCTTGTTTTTACTGTCGAGAAGTATGCAAGTTCGACAAATTAAGAGAACATCAAAAGAAACACCCAAAAGCAAGCATCTACAAGTTACTCACCAAATACAATGCAGATGAATTTGTTGTTTATGCCGATATCACAGACTTAAAATGCACAATTTGTAAGAAGAAGTTGATTAATCTAAGCGAATTGAAGACTCATTTGACTGAAAAACACGGAAGGAAAATATTCGCAAGCGCAGACAGAGTGATCCCTTTTAAGTTGAAAGAAACGGACTTCGAGTGCCAAACTTGTGGACGAAAGTTTGAAACTTTTGGGGCTATCGAAAAACATATGAACACTCACTTTGGGAGTTTTATGTGTGAAGCGTGCGGGGCTGGTTTTATAACAAAACACCGATTAGCAGTACATAATTACACCCAACATAAAGACGAAAAAGTTGTTTGCGAAGTGTGCAAGAAGAGTTTTCGAACACAAATGAAGCATCGTCTCCATTACGAGGGTGTCcacaaaaatatgaaaaaattcaAATGTACTAAATGTCCGGAGAAATTCATCGATTACTTTACTAGACAGAAACATTTGGTAGACGTGCATTCTGAAGCCCCATTGCTATACAAATGTAATGTCTGCGACAAAGGGTTTAATAGGAGATTTAGCTTGTCTTCTCACGTGAAACGTTGTCATATGGACGAGAAGAATATAAAATGTCAGGAGTGCACATACGCATGTTATACTAAGAGTGAATTGAAAGATCATATGATCAAACATCAGAGTCCGCAGAAATTTGAATGTCCAATTTGTAAGAAGACGTACGGTAGAAATAGGTCGCTGGCGATGCATATGAAGGTACATAAAAATGATAAGAGGTAG
- Protein Sequence
- MFSTNNNTEVEEVDETMYGQCRCCMANGQHRDVTKEYYYNNIKEVYKDIFLECFNLSLTPHNRISSLICENCVHRLRDATSFRMMVAATEEQLLNAVIFKSDPDNDTEFVDGPQNFTTEIKIESEADNIEIEPGNLQDSLEGCKDNERMNDDERRNYERMIEQRMNEDNDGWSSESSETELVIDETRDNGYTVSEDCDTDDDVDGVGVDDCESTFSSLTMSTTSAVDDEPCEIIEGEPKLLARFPTFAPQPLPKRSELTKICPVYDEHLKKLEDKIVEPKSLEWYFKVPDLKETLMSDKQALAVNATTLFEYSNATAFKTKMRNGYPCFYCREVCKFDKLREHQKKHPKASIYKLLTKYNADEFVVYADITDLKCTICKKKLINLSELKTHLTEKHGRKIFASADRVIPFKLKETDFECQTCGRKFETFGAIEKHMNTHFGSFMCEACGAGFITKHRLAVHNYTQHKDEKVVCEVCKKSFRTQMKHRLHYEGVHKNMKKFKCTKCPEKFIDYFTRQKHLVDVHSEAPLLYKCNVCDKGFNRRFSLSSHVKRCHMDEKNIKCQECTYACYTKSELKDHMIKHQSPQKFECPICKKTYGRNRSLAMHMKVHKNDKR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00375680;
- 90% Identity
- -
- 80% Identity
- -