Basic Information

Insect: Atethmia centrago
Gene Symbol: -
Assembly: GCA_905333075.2
Location: HG995393.1:2156819-2180849[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.21 32 7.0 0.6 1 23 86 109 86 109 0.95

2 12 0.22 34 7.0 0.5 1 23 117 139 117 139 0.94

3 12 0.23 36 6.8 1.5 1 23 143 165 143 165 0.96

4 12 0.0004 0.062 15.6 0.9 1 20 172 191 172 193 0.94

5 12 0.0041 0.63 12.4 1.0 2 21 200 219 200 220 0.92

6 12 0.00014 0.021 17.0 0.6 2 23 236 257 235 257 0.94

7 12 0.00023 0.035 16.3 0.1 1 23 262 284 262 284 0.98

8 12 0.0017 0.27 13.6 4.1 1 21 293 313 293 318 0.93

9 12 2.1e-05 0.0033 19.6 2.3 1 23 326 349 326 349 0.93

10 12 0.0043 0.67 12.3 0.4 1 23 355 378 355 378 0.95

11 12 0.015 2.3 10.6 0.3 3 19 391 407 389 408 0.89

12 12 0.03 4.7 9.6 0.9 1 23 421 444 421 444 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.21	32	7.0	0.6	1	23	86	109	86	109	0.95
2	12	0.22	34	7.0	0.5	1	23	117	139	117	139	0.94
3	12	0.23	36	6.8	1.5	1	23	143	165	143	165	0.96
4	12	0.0004	0.062	15.6	0.9	1	20	172	191	172	193	0.94
5	12	0.0041	0.63	12.4	1.0	2	21	200	219	200	220	0.92
6	12	0.00014	0.021	17.0	0.6	2	23	236	257	235	257	0.94
7	12	0.00023	0.035	16.3	0.1	1	23	262	284	262	284	0.98
8	12	0.0017	0.27	13.6	4.1	1	21	293	313	293	318	0.93
9	12	2.1e-05	0.0033	19.6	2.3	1	23	326	349	326	349	0.93
10	12	0.0043	0.67	12.3	0.4	1	23	355	378	355	378	0.95
11	12	0.015	2.3	10.6	0.3	3	19	391	407	389	408	0.89
12	12	0.03	4.7	9.6	0.9	1	23	421	444	421	444	0.97

Sequence Information

Coding Sequence: ATGGATTTAGTAGGTACCGAAGACGCAGTCGTGGATTTGTCTAATCACGTGGCTAGGACGCTAGATAGAAAACACAAGTGCCTGGTGGATTCCCCAAAACGCCAGAAGACTAAGAAGGACAAAAACCCCGACAAGAAGAGTAGGAAGCTAAAGAATCTACCAGAAGAGTTAGTAGAATTGTACACTATGAGCAAAGAAGAGATGTGGGCTATCAGAATTGAGGATCTCAACAGCAAGGAGTTTCAGAAGCTTAAATATAgGTGTGACGATTGCATAATTGCCTTCAACACTGAGAAGCTGATGCATGACCATCTGAATGGAAAACATCAACCTAAAAGTGAAGACTGCCACCAATGCTCAATATGTCAAGCCTATTTCCTAACTAAAGACAACGTGGCGGCACACAAAGCATTACACCAACAGGGCTATAAATGTCGGGAATGTGGCTTCAACACTACGCTAAAAAGACGCATGTTGAAACATGTTGGAACTCACGCTCCGAGTGGAGATGCTCATGTGTGTCAGACTTGTGGGAGTAGCTTTAGCACAAAATCGAAACTAACATACCACCGCGGCGTCTGTTGTCAAGAAAGGCCACAATGCGACTGCTGTGGGAAAGTATTCGCCAACAAAATGACGCTCAAGTACCACCTCAAAATCCTGCCACAGAATAAAGATGATAAGCCTAAAGAGAAGCTGTTCATACCTTGCAAAGGATGTGATAAAGTGTTTCATTCTAAGAAGAGTTATAGAGCGCATGTTGTAATTCACGACGGTCTAACCTACCCGTGCCCAATTTGCGGCAAACTGTTTCAATGGAAGCGCAACCTGGCGCGACACGCGCGCAACCACCGCGAGCGCCAGGCCGGCAACTTGCACGAGTGTCGCGCTTGCGGCAAGACTTTCGCAAGCAGGGACTGCTACAACAACCACATGCGGCTCAGCAAGAAGCACGTGTCGCAGGATGCTTTTCCACATGAATGCAACTATTGCGGAAAGAAGTTCGCTACAAAATGGTGCCTCACCGACCATATTGACTGGGATCACTTGAAGAAAATCAAATACCAATGTAGCTTCTGTTTTAAGGCATTCAAAACAGCGAAAATATTGGTGGCTCATGTCAATAATATACACGAGGGTAAGAAAAAGGAAGCGGAGGGCGAACATCTGTGTGAAATATGCGGGAAATCGTACAGGACAGTGAAACGCCTCAAGGGCCACGTATGGGCGATGCACACAAAACGGTCAAGCAGCAAGATATACAAATGTAAACTATGTCCGGCTACGTTCATGTGGCAGACTAGCATATACAAGCATATGAAGATGATGCACGACAATAACAAGAAGAGTAAGACACCACGCGTCGTCCAACCAGTGAAGAAAGAAGAGCCCTACCCGGGAATCGACCTAGCGAACCGAATGCAGTACTTCCAACAGAACATCGGCGGCAACTTAAATATAGTTCACATACAACCATTGGGAATGGCTCAGAATAttgtttag
Protein Sequence: MDLVGTEDAVVDLSNHVARTLDRKHKCLVDSPKRQKTKKDKNPDKKSRKLKNLPEELVELYTMSKEEMWAIRIEDLNSKEFQKLKYRCDDCIIAFNTEKLMHDHLNGKHQPKSEDCHQCSICQAYFLTKDNVAAHKALHQQGYKCRECGFNTTLKRRMLKHVGTHAPSGDAHVCQTCGSSFSTKSKLTYHRGVCCQERPQCDCCGKVFANKMTLKYHLKILPQNKDDKPKEKLFIPCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHARNHRERQAGNLHECRACGKTFASRDCYNNHMRLSKKHVSQDAFPHECNYCGKKFATKWCLTDHIDWDHLKKIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKEAEGEHLCEICGKSYRTVKRLKGHVWAMHTKRSSSKIYKCKLCPATFMWQTSIYKHMKMMHDNNKKSKTPRVVQPVKKEEPYPGIDLANRMQYFQQNIGGNLNIVHIQPLGMAQNIV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00726786;
90% Identity: iTF_01027700;
80% Identity: -