Acen058072.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- -
- Assembly
- GCA_905333075.2
- Location
- HG995396.1:8391287-8396753[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.2 1.8e+02 4.7 0.1 1 23 159 182 159 182 0.88 2 20 0.035 5.5 9.4 1.8 2 23 208 230 207 230 0.95 3 20 0.022 3.4 10.1 3.9 2 23 253 274 252 274 0.96 4 20 0.0018 0.28 13.5 0.9 1 23 278 300 278 300 0.96 5 20 0.0021 0.33 13.3 1.3 1 23 305 328 305 328 0.96 6 20 0.042 6.5 9.2 0.5 2 23 336 358 336 358 0.91 7 20 0.0025 0.39 13.1 5.2 1 23 365 388 365 388 0.97 8 20 0.00063 0.097 14.9 2.4 1 23 394 416 394 416 0.97 9 20 4.1e-05 0.0064 18.7 3.4 1 23 422 444 422 444 0.98 10 20 1.4e-05 0.0022 20.1 1.2 1 23 450 473 450 473 0.97 11 20 3 4.7e+02 3.3 0.3 1 23 547 570 547 570 0.88 12 20 0.042 6.6 9.2 0.0 2 23 596 618 595 618 0.94 13 20 0.031 4.8 9.6 1.7 2 23 641 662 640 662 0.95 14 20 0.00023 0.036 16.3 1.5 1 23 666 688 666 688 0.97 15 20 0.017 2.6 10.5 0.6 1 23 693 716 693 716 0.96 16 20 1.8 2.8e+02 4.1 0.3 2 19 724 741 724 746 0.76 17 20 0.00024 0.038 16.2 1.7 1 23 753 776 753 776 0.95 18 20 5.5e-05 0.0085 18.3 3.1 1 23 782 804 782 804 0.97 19 20 0.00049 0.075 15.3 0.5 1 23 810 832 810 832 0.99 20 20 8e-05 0.012 17.8 0.5 1 23 838 860 838 860 0.98
Sequence Information
- Coding Sequence
- ATGTGCCACATAACTTATGTCTTCCTAGAGTATTATGTCCTGATTGACAATACAACGAAATCCAAATTGGAACAATCTAAAAAGAAACTGAGGACAATGCCCACCATCTTTAAAACAAAAGCATCTTTTATGGatgaaaaaactaaaaaattaattgagatgaataaattaaaagcaaaaaacttaacaaaaccGGTCGTAACCACAGTAATAGAcgatgaaataaatattaccgAAACAAAAGTAATTGATATAGAGATTAATATGGAGCCTAAGATAGAAGAAATGGAAGTTCCAGTGAATGCCGATCAAGTCCGAACGCGATACAAGGCTATAGTCAATGACAAAttcaagaaagaaaataaagagcCCGAGAAATTTGAAGTCAACGAAATGAATAAACATAAAGATAacataaaaactatattacaAAATTCTAACGCAACAATCATCAAAGGTTTTTGGGGAACTGGTTATTCTTGTAATTTTTGCGATGAACAGAGAGAAATACCTTCAGAATTAAAGCTTCATAATTTAGAAGCTCATAGCAATGTTGGAGAAGAAGCTATCAAAGTGAAATATGTATCAGATTTAGTTATAAGACTAGACATTACCGATCTCAAATGCAAACTGTGCAACACAAGTTTAAACTCTTTAGAAGACTTCACCGCACATCATTCTAAAATACATTCGAAATTGTTACACACAGATATTAAAAACCACATAATCCCTTTCAAATTTAACACAGACAGCTTACAATGTTGTATGTGTAAGAAGGAATTCAAGTATTTCAAACTGCTTTCAGAGCACATGAGTGAACATTACAGGAACTACGAATGCTCGGTTTGCGAGCGTGCTTTTATTAACAAGCAATCAATGCAAACTCACAGTTACAGACACAACAAAGGTGTCTTCAAATGCTCACATTGCCCGAAAGTTTTCGACTCTAGACCGAAAAGAAGCGTGCATGAAAGAGTAGTGCACGCTCTATCGAATAAGACGCGGAAATGCTCGTTCTGTAGCGAAAGATTCGCTACGAAAGACTTGGTTCAAAGCCATGAGGTCAAAGCCCATGGGGTTCAACCAACAGTCTTTTCCTGCCAAGCTTGCAACAAGTCTTACCATAGCCAGAGTTCGCTGACGACGCATAGAAAGCGCTACCATTTAATGTTGAGACCTCACAAATGCTCGTATTGTGACATGGCATTTTTCTCCAAAATTGAGTTGCGTTCCCATACAGTAACTCATACAAAATCAAGGGATTTTAAGTGCGACATGTGTACGAAGTCTTTTGGGACGCGGTGTAGTCTTAATCAACATATTAGGGGACATTTAGATGATCGGAGGTTTAAATGTGATATTTGTGAGAGAACGTTCGTTCATAGGACCGCTTGGAAAGTGCATATGAGGAATGCCCATCGGAATAAAAATGCTACTGAGAATGAAAACGGCAAAACTAAGAGCATCGTACTGAGAAACAAAGCGCAGGGGAATAAAAACACTACACAGGCTGAAGATGAGAAAGATATGAACAGCATACAGAAAAACAGGAACCTTCTGGCAAATTTCAAAAAGAGCGTTCGTTCTGTCCTAAGATGCACAAACGCTACACCAATCCGAGGATACTGGGGCATCGGATATGCTTGCATTTACTGCAAATATCAAACCCCTGCAATTTCAGCGCTGAAAAAGCACACACTGACAACACATTCCGCAAATGTTGACGAACTTGACAATGTGAAATACGTACCAGACATGATCATTAAGCTAGATATTACAGACCTCAAATGCGAAATATGTGACCGTGAAATAGACACCCTTGAAGAAATGATGAACCATATAAAAGCTATTCACAGACAACCCATACATTTAGACGCTACCAATCATATTATTCCATTTAAATTCGGAAACAAGGATTTATCGTGCGCTCTTTGCGCTAAACAGTTTAATTATTTCAAGCATTTATCTGAACATATGAATGAGCACTTTCCAAACTATACATGTAAGGAATGCAATCGTTATTTCATCAACCTACGCTCTTTACGAACTCACGCGATTAGACATCAAATAGGCACGTTCTTCTGCGCGTTTTGCCCTAAAATCTTCGACACTCGAATCAAAATGAAGGAACACGAAAGAGTTTTACATCTAAAAGGTTCTAAAAATCGTAAATGTGGGTATTGTGACGAGAGATTCATGGATGCTGTAAGGAAGACGGAGCATGAGGTGAAGGAACATGGCGCTCCAGTTCGTAAATTTGCTTGCACAGACTGCGGCAAACTTTTTGACAGTCAACGTTCCGTAAAGAATCATATGAATCATCTTCATTTACAGCTTAGACCCCACAAGTGCCCGGAATGTGACAAAGGGTTCTATAATAAAAATGAGATGAAACGACATAGagtaaaacatactaagatcaAGGAATTTCAATGCTCGGTTTGCTTAAAATACTACGTTTCTAGGGCTTCTCTTAGGGGCCATATGAAAATACATGATATTGAGAAGACTTACACTTGTGAGAGGTGCGGTGAAACGTTTATACAGAAGAATCTTTGGGTGAATCATATGACGCGCCATGCGAATGCGCAAGCGCTGAAAACGCGGAACTTAAGAAAAAATCAAGAAATCGCTGAAAATGTTTAg
- Protein Sequence
- MCHITYVFLEYYVLIDNTTKSKLEQSKKKLRTMPTIFKTKASFMDEKTKKLIEMNKLKAKNLTKPVVTTVIDDEINITETKVIDIEINMEPKIEEMEVPVNADQVRTRYKAIVNDKFKKENKEPEKFEVNEMNKHKDNIKTILQNSNATIIKGFWGTGYSCNFCDEQREIPSELKLHNLEAHSNVGEEAIKVKYVSDLVIRLDITDLKCKLCNTSLNSLEDFTAHHSKIHSKLLHTDIKNHIIPFKFNTDSLQCCMCKKEFKYFKLLSEHMSEHYRNYECSVCERAFINKQSMQTHSYRHNKGVFKCSHCPKVFDSRPKRSVHERVVHALSNKTRKCSFCSERFATKDLVQSHEVKAHGVQPTVFSCQACNKSYHSQSSLTTHRKRYHLMLRPHKCSYCDMAFFSKIELRSHTVTHTKSRDFKCDMCTKSFGTRCSLNQHIRGHLDDRRFKCDICERTFVHRTAWKVHMRNAHRNKNATENENGKTKSIVLRNKAQGNKNTTQAEDEKDMNSIQKNRNLLANFKKSVRSVLRCTNATPIRGYWGIGYACIYCKYQTPAISALKKHTLTTHSANVDELDNVKYVPDMIIKLDITDLKCEICDREIDTLEEMMNHIKAIHRQPIHLDATNHIIPFKFGNKDLSCALCAKQFNYFKHLSEHMNEHFPNYTCKECNRYFINLRSLRTHAIRHQIGTFFCAFCPKIFDTRIKMKEHERVLHLKGSKNRKCGYCDERFMDAVRKTEHEVKEHGAPVRKFACTDCGKLFDSQRSVKNHMNHLHLQLRPHKCPECDKGFYNKNEMKRHRVKHTKIKEFQCSVCLKYYVSRASLRGHMKIHDIEKTYTCERCGETFIQKNLWVNHMTRHANAQALKTRNLRKNQEIAENV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00758482;
- 90% Identity
- -
- 80% Identity
- -