Basic Information

Insect: Atethmia centrago
Gene Symbol: -
Assembly: GCA_905333075.2
Location: HG995381.1:6509643-6515947[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00073 0.11 14.7 3.6 1 23 129 151 129 151 0.95

2 12 0.0034 0.52 12.6 0.4 2 23 157 178 156 178 0.96

3 12 0.019 3 10.3 6.4 2 23 223 244 222 244 0.94

4 12 2.3e-05 0.0035 19.5 0.7 1 23 253 275 253 275 0.96

5 12 3e-05 0.0046 19.1 3.8 1 23 281 303 281 303 0.97

6 12 8e-06 0.0012 20.9 3.4 1 23 309 331 309 331 0.99

7 12 3.3e-08 5.1e-06 28.4 1.0 1 23 337 359 337 359 0.95

8 12 2.6e-05 0.0041 19.3 2.4 1 23 365 387 365 387 0.98

9 12 5.4e-06 0.00084 21.4 0.5 1 23 393 415 393 415 0.98

10 12 0.0037 0.57 12.5 6.4 1 23 421 443 421 443 0.97

11 12 2e-06 0.0003 22.8 2.1 1 23 449 471 449 471 0.98

12 12 0.00053 0.083 15.2 0.5 1 20 477 496 477 499 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00073	0.11	14.7	3.6	1	23	129	151	129	151	0.95
2	12	0.0034	0.52	12.6	0.4	2	23	157	178	156	178	0.96
3	12	0.019	3	10.3	6.4	2	23	223	244	222	244	0.94
4	12	2.3e-05	0.0035	19.5	0.7	1	23	253	275	253	275	0.96
5	12	3e-05	0.0046	19.1	3.8	1	23	281	303	281	303	0.97
6	12	8e-06	0.0012	20.9	3.4	1	23	309	331	309	331	0.99
7	12	3.3e-08	5.1e-06	28.4	1.0	1	23	337	359	337	359	0.95
8	12	2.6e-05	0.0041	19.3	2.4	1	23	365	387	365	387	0.98
9	12	5.4e-06	0.00084	21.4	0.5	1	23	393	415	393	415	0.98
10	12	0.0037	0.57	12.5	6.4	1	23	421	443	421	443	0.97
11	12	2e-06	0.0003	22.8	2.1	1	23	449	471	449	471	0.98
12	12	0.00053	0.083	15.2	0.5	1	20	477	496	477	499	0.94

Sequence Information

Coding Sequence: ATGGTAGACATAGCTACGTCGTGTCGGACTTGTATGAAGGACAATGTGGCTTTGGTAGACTTGTATGAAATAGTTGAAATTGGGGAAAATTGTCTCCAATTAGCCGAGTTACTTGTGCAGTGTACTCCAATTGAGgTCTCCAAGGAGGATGGGTTACCACAGCACCTTTGTGATGGCTGTGTTAAGGTGCTGCAACTTGCATACTCATTCCGTAAGCAGGCGGCGAAGGCACAAGATGAATTTAAGAAACTCCtacagaaaaatgtaaaaacagAACCTCAAGAAGTTGACCTCAAAATGGAGCATGATCACGATTATTTTGCAACTTATGAAGATTTCAGTTTCAACCCAGATTATTCCAAAACTGAGATTGAAGACAAAGAATATACATGTACTAAATGTaataaacaatttacaaaacagaaGAAATACTTGAAGCATTTAGTAGCACATGAGAATTTATCACTAGAATGTGACATTTGTAAAAAGTTATATCCTAACCAGACATTGTTGGATAAACATAGAGCCAAGCATGAAATGAATATGTGTTTTGTTAGTGATCAAAGTTTTACGAGTGATACATGTTTACTGGAAGACAATATGGTGGACCACACTGAGGTAGTGGACGTAAAAACTGAAGATGAGGCACCAGCACTTGAATTACTACAGTGTATACATTGTAGTCATACATTTTCAAAGCAGAGATCACTCTCAATGCATATGAGAAAACATAGAGATAAAAACAAGAAGAAAGAATTCATTTGTGACACTTGTGGGAAGGCATTTGCCATGAAACATTTGTTGAAGCGGCACGTTGTGATGCACAGCGAAGTAAAACCACACAAATGTGAGAAATGTTCCAAGACATATGCCCGACGTGACCAACTGATGTCTCACATGTACTCACATAAAGAGCACAAGCCTTATGTCTGTGAATATTGCAAGAAAAGTTTTGCCCAAATGTGCAGTCTAAAGGACCATCTCCGCACCCACACTGGCGAGACGCCATTCCTGTGTTCAGAGTGTGGCAAGGGATTCTCCAACAATTCCAACCTGAGGCAGCACATGATGAGGCATACCGGAGTAAAGCCGTATGCTTGTAACTTGTGCCCTAAGACATTCTGTACTAAAGGTCAGATGAGGTCTCACGTGTCCACGCATACAGGGGAGCACCCTTACAAATGCGAGGAGTGTGGCGCCGCCTTCACCAAGCAGAACTCTCTGAAGAAGCACTCCATGATACACCTCGCTATACGGCCATTTGCCTGCGAGACTTGTAATATGAGGTTCACCTGCAAAGATCATTTGAAGCGTCACACCAGAATCCACACTGGCGAGAAACCTTACAAGTGCAAGTATTGCGAGCGAGCGTTCTCTCAGAGTAACGACTTGGTGAAGCACACGCGCCAGCACATCGGACAGAACATATACCAATGCACAATATGCGGGTCCCGGTTCCGTCTACTATCAGAACTAAAGCAGCATTACCCAGTCCATTTCGCAAACGGAATGGACGAGGCCAACGACCCACAAATCAGTACCAAAGACAGCACAGAACCAAACGCCTATGAAGGTCCAAAACATCTCCCAATGTTAGAACTTAAACCGCCAGAATTTAACCTTATGACCTTCAAAAATGATAAAGATCTTCCTCCCCTTATCTTGAAACCTCCAGAGGTTGATAAGGATCTTCAGATGTTGACTTTAAAGCCTCCAGAAAGTGTTGAGAATGATCTCGTGAATTCTTGCCCGGATTCGAACAGAATCGTTATTACGATCAACAGTTGTGATACGAATGGCGTTGTTAATGGCATTACTATTAAACTGCCGTCAAAAGAGAGCTAG
Protein Sequence: MVDIATSCRTCMKDNVALVDLYEIVEIGENCLQLAELLVQCTPIEVSKEDGLPQHLCDGCVKVLQLAYSFRKQAAKAQDEFKKLLQKNVKTEPQEVDLKMEHDHDYFATYEDFSFNPDYSKTEIEDKEYTCTKCNKQFTKQKKYLKHLVAHENLSLECDICKKLYPNQTLLDKHRAKHEMNMCFVSDQSFTSDTCLLEDNMVDHTEVVDVKTEDEAPALELLQCIHCSHTFSKQRSLSMHMRKHRDKNKKKEFICDTCGKAFAMKHLLKRHVVMHSEVKPHKCEKCSKTYARRDQLMSHMYSHKEHKPYVCEYCKKSFAQMCSLKDHLRTHTGETPFLCSECGKGFSNNSNLRQHMMRHTGVKPYACNLCPKTFCTKGQMRSHVSTHTGEHPYKCEECGAAFTKQNSLKKHSMIHLAIRPFACETCNMRFTCKDHLKRHTRIHTGEKPYKCKYCERAFSQSNDLVKHTRQHIGQNIYQCTICGSRFRLLSELKQHYPVHFANGMDEANDPQISTKDSTEPNAYEGPKHLPMLELKPPEFNLMTFKNDKDLPPLILKPPEVDKDLQMLTLKPPESVENDLVNSCPDSNRIVITINSCDTNGVVNGITIKLPSKES*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00623390;
90% Identity: iTF_00123581;
80% Identity: -