Basic Information

Insect: Atethmia centrago
Gene Symbol: igdb-2
Assembly: GCA_905333075.2
Location: HG995386.1:3137383-3155612[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2.4e-07 6.9e-05 24.3 0.0 1 38 582 618 582 620 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2.4e-07	6.9e-05	24.3	0.0	1	38	582	618	582	620	0.96

Sequence Information

Coding Sequence: ATGGCAGACGGCCGCAACCACGTCCCCTGCTGTATCCAGGAACGAGTACCGGACATCTGCCAGGACGTGTGCAGAGGAGAGTTCACTCCAGTAACCGACAATATTAAGACACACTACTCGTGTGCTTCTTACATGGAGAAGACGTTGGCCTGCATTGTTGAAGGGATTGAACTCCTCCCAAGTCCACCAGAAGACGTGGAAGTGGAACCTCTCAATGAAAAACAACTGAACGTATCCTGGAGTCCCCCCATCGAGAACACAGATTCAGTCATAGAGTATGTGGTCAACGTCACGACTCTGCGCTCCTTTGATGCCCATCTCATCGACCCCTCAGAGAGTTCCATCAAGAACAATGACACGATGAAGGTTATTCTGCCCATGACGTACAAAGTGCCTCCGAATAAAACCTATTTTGTCTTGAACGATTTACTGCCTTTTACAATGTATGAGATCACAGTAACCTCGTATAATATTCATGGCTCCAGCTTGCCCAGTTATGCAATCAGGTCTCTGACCCTGACGCCCGGTAAGATGAAGTCCACGCAGGTGGCGGCGGCGCCCGCGCTGCCCGACGTGCGCGCGTGCTGCCGGCGCGCCGGCGTCAGCCAGCGCGGCTGCGTCGACAAGCTGTGCGATCCCACCGCCACCGCGGACATCGCATTGCAGGTGACGGACCTGATGATCTGCGCGCCCTGGGCTGGCGTGACCTTCGGCTGCCTCGCCAATGGGATGGACCATACCCCGTGCTGTCGCTCTAAGGGACTGCCCGAGTCCTGTCTGCCGTTGTGCAGCGGGAATATTACGACGCTtgattttaatcattttaaATGTCTCCGCTACATGAACTCTTACACAAACTGCCTACTCCGCGGGTACGGGGTGCTCCCGGGTGCCCCCTCGCGGCTGTACCTCACCAACATCGACACAGACTACGCAGTGGTCCACTGGTCCCCACCAGCAGCATTAGCAGATACCGTGCAGCACTATAATCTGCATTACAGGACCCTACAGGCGGAAGATGAGTACAGGATTCTGGAGAAGTTGCGTTCTCCGTACATCTTAGAAGATTTGGAATCCAACATGGACTACGAGATTTTCTTAGAAGCTGTGAACGAGCATGGCGTGGGAGATGCATCTCCCAGACTGATCTTCAGGACACAAAgtcaaTTAATCGAAGAAGAGGAAGAAGTAGCGAACTCGTACAACGTGACGGCGTGCTGCGAGCGCGTGCAGCTGGCGGGGGTGTGCATGCCGCTGTGCTCCTACGACGCCAAGATGTCCGACCTGCGGATGTTGGCGCCGCTCTGCGCGCAGGACTTCCATAAACTACTGAGATGTGGCGCTGGAGGTCGCAACCACGAGCAGTGCTGCTCGCGGCGCGGCGTGCCGGCGCCGTGCCGCGGCGCCTGCGCGGGCGCCTACAGCGCCAGCGGCGGCGTCAACTCCTGCGTGCCCTACATCGGGAACATCGTGCAATGCTTCGAGGAAGGCACGGACCTGCTGCCGGGGCCCCCGCGCGAACTGCACGCGCTGGTGAGCGCCAGCAGGGTGTTCCTGGACTGGGCGCCGCCACAAGATGGCACCAACGCCACGTCGTACGTGGTGCACTGGCAGAAGATCGACAACAACTCGCAGCCGTACAGCTATAACACTATGCAGACTACTTACAACGTGAAACCACTTATCCACCTAGGTACCATGAAGCCAAAggataaaaataaaccaaataaacGAAAAATGTACACAAACGAAAATCTACTAAAAGCCTTGGATGCAGTTAAAAAAGGTATGTCTAAAATACTGGCCTCGAAAACTTACAATGTGCCAAGAGGAACTATCCAGTCGCGATTAAGAAAGCCGTGCAATGATCTACCAGGTCCTAGGCCAATATTGTCGACAGAAGAAGAAGGAGTTTTGGTACAGTGGGTTGTAGATTGCTGTCGGAAAGGATTTCCAAAAAGAAAATCTGATTTACAATTAAGCGTAGCAAACTTCTTAAAGAAGTCAGGAAGGGAAAACCCCTTTAAAGATGACATACCTGGAAAAAAATGGTATGATCTTTTTATGCGCCGTCATCCAGAACTCAGCGAACGCACTGCCGAAGCTGTCACATCAGCCAGTGCTAATGTGTCAGAAAAAGACATCAAAGGGTGGTTCCACAAAATTGAGATTTACCTTAAGGAAAACAACTATTTTGACATCTTACAGGACCCAGCTCGTGTTTTTAATGGGGACGAATCTAACTTTCAGTTATGTCCCAAAAATGGCAAAGTTATTTCGTTACGAGGAGAAAGAGACGTGTATGAAGTGGATCACGCTACAGCTAAAACAGCCCTTACTGTACTGTTTACATTTTGCGCCAACGGAGACGTAACACCTCCATTAGTTGTGTTTCCCAACAAGAGGCTTCCCAAAGATATAACATCATCAGTTCCAGATGAGTGGGGCATTGGTCTAAGCGTTACTGGCTGGATGAAGTCTGAACTTTTCtatgattatataaaaaatgtgtttcaTCCTTATATCTACAAAAGAAAGGTAACATTTCCTGTCATACTATTTGTAGACGGACACAAAACACATCTCAGTCTTGAAGTAAGTGAATTGTGCAGCAAATTGCAGATTGTTTTGATAGCACTTTATCCCAACGCCACACGGATTCTACAACCAGCTGACGTGTCAGCATTTAGACCTCTCAAAACTGCATGGAAGGAAAGTGTCCTGAAATGGAGGAGAGATCATCCTTTGGAGACTCTCACAAAGAACAATTTCGTACCTGTTCTCAAGGATGCTTTAGAGGTTGGTGTCAAAGATACGACAATTATAAATGGATTCAGGACTACTGGCTTATGTCCCTGGAACTCTGGTGCCATTAACTACAATAAATGTCTGGGTAAAGGAAGTAAACAAGATGGAGAACCAAAAGAAGACAATTTAAAACTACAAGACaattcaaataaagaaaaaattatgacACGCGAAATTTTAGAAAACATTGTAGggcatgaaaaggtaacatTTCTGCAAAGAACGCCGCTTGAAAATCTGACAGAAACAGAAaggattttgaagaaaatttgttgtttttttgaaaATCAAGAAACTAATACGTCCataaacaaagaaactcacatcGAAATTGAAAATTTCGAAGCAGTTGGATTTCAAGACATTGATCAATTACCAGTAATATTAGCAGAAGATTTTGTAGACGGTATGCAAGCTATGACCAATTCTATAGCGAATGAACAATGTTATAACAATACTGAAGATTGTCTCGGTAGTGCGCAATTGGTATGTTTTGATAGTCAACAATATTTACTAACACCTGTCAAATTACAGGACGTTTTGACTGTTGAAAAAACACCTGAACGAAAAGGTGTTAAAAATGTAGAGAGATCATCATTCGTGCTTACTTCAGCGGAATGGCAGAAGACTgaaaatgacaaattaaaagcTAAAAAACTTAAAGAAGAAGAACAAGAGACCCGCAAAAAGAACAGATTACttaaacaagatgaaaaaaacaaaacaaaagaaaccaCCAGAAACAAGATTAACAAGAAAGCAAAAGGGACAGtagaaactaaaaaacaagagACTGAAGCTAATCTTATACAGGAgactaaactaaataaaactacaGTAGAAACCACCAGAAACAAGATAAACAAGAAAGCAAAAGAGGCAATAGATACTAAAAAACAAGAGACAGAAGCTCCGAATAAAGAGgagacaaaagaaaataaatcacAAGAGACTTTCATTAATCACCACCAGACATTTAAACACGAAGTTATGATTCATAACACGAATATACCATCCTCACCTGAAAATGAAAACTCAATTAATATTAAGAAAAGAAAAGCCGAAGAGAAGAGTAACTAtccaccaaataaaaaaatccaaattcTTTCCGACATTAAACTTAATTTACCACACAGAACCTCGCAAGTTGGTCAAAGAGATAACGAAATAGACCCgttggaaaaaataataaataatacgaaAAAGAAGACTTACACTTTACTAGAACTAGAGAAGATCCTTCAAGAGGATTAG
Protein Sequence: MADGRNHVPCCIQERVPDICQDVCRGEFTPVTDNIKTHYSCASYMEKTLACIVEGIELLPSPPEDVEVEPLNEKQLNVSWSPPIENTDSVIEYVVNVTTLRSFDAHLIDPSESSIKNNDTMKVILPMTYKVPPNKTYFVLNDLLPFTMYEITVTSYNIHGSSLPSYAIRSLTLTPGKMKSTQVAAAPALPDVRACCRRAGVSQRGCVDKLCDPTATADIALQVTDLMICAPWAGVTFGCLANGMDHTPCCRSKGLPESCLPLCSGNITTLDFNHFKCLRYMNSYTNCLLRGYGVLPGAPSRLYLTNIDTDYAVVHWSPPAALADTVQHYNLHYRTLQAEDEYRILEKLRSPYILEDLESNMDYEIFLEAVNEHGVGDASPRLIFRTQSQLIEEEEEVANSYNVTACCERVQLAGVCMPLCSYDAKMSDLRMLAPLCAQDFHKLLRCGAGGRNHEQCCSRRGVPAPCRGACAGAYSASGGVNSCVPYIGNIVQCFEEGTDLLPGPPRELHALVSASRVFLDWAPPQDGTNATSYVVHWQKIDNNSQPYSYNTMQTTYNVKPLIHLGTMKPKDKNKPNKRKMYTNENLLKALDAVKKGMSKILASKTYNVPRGTIQSRLRKPCNDLPGPRPILSTEEEGVLVQWVVDCCRKGFPKRKSDLQLSVANFLKKSGRENPFKDDIPGKKWYDLFMRRHPELSERTAEAVTSASANVSEKDIKGWFHKIEIYLKENNYFDILQDPARVFNGDESNFQLCPKNGKVISLRGERDVYEVDHATAKTALTVLFTFCANGDVTPPLVVFPNKRLPKDITSSVPDEWGIGLSVTGWMKSELFYDYIKNVFHPYIYKRKVTFPVILFVDGHKTHLSLEVSELCSKLQIVLIALYPNATRILQPADVSAFRPLKTAWKESVLKWRRDHPLETLTKNNFVPVLKDALEVGVKDTTIINGFRTTGLCPWNSGAINYNKCLGKGSKQDGEPKEDNLKLQDNSNKEKIMTREILENIVGHEKVTFLQRTPLENLTETERILKKICCFFENQETNTSINKETHIEIENFEAVGFQDIDQLPVILAEDFVDGMQAMTNSIANEQCYNNTEDCLGSAQLVCFDSQQYLLTPVKLQDVLTVEKTPERKGVKNVERSSFVLTSAEWQKTENDKLKAKKLKEEEQETRKKNRLLKQDEKNKTKETTRNKINKKAKGTVETKKQETEANLIQETKLNKTTVETTRNKINKKAKEAIDTKKQETEAPNKEETKENKSQETFINHHQTFKHEVMIHNTNIPSSPENENSINIKKRKAEEKSNYPPNKKIQILSDIKLNLPHRTSQVGQRDNEIDPLEKIINNTKKKTYTLLELEKILQED*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -