Acen006331.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- -
- Assembly
- GCA_905333075.2
- Location
- HG995368.1:8872292-8873146[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-07 0.00023 22.6 0.0 1 38 12 50 12 55 0.91 2 2 10 2.9e+03 -0.1 0.1 17 25 106 114 104 114 0.88
Sequence Information
- Coding Sequence
- ATGGATGACCCCAACAAGAAGAACAGAAAATACTCGGAGACCGATCTCAAAACCGCTGTTGAAAATGTTTTGAGTTCAACAATGACAGTTTACAGAGCTTCGAAGGAGTTTAAGATTCCATGGTCGACATTAAAAGAGAATGTGACGAAGTACAAAACTCTACGAGAGGGTAATCAAGATGCACAGATCGTAATGTCCAAGATAGGAAGGCCGTTTGCGTTACCTGTTGAAATAGAACAAAAGTTACTGGCCTATATTATTGAGATGCAAGAACGTGGTTTTGGTCTTACAGTTACCAAAATAAAGCAAATAGCATTATCTTTAGCAAAAGCTGCCAACATTTGCTGCACATTCAATGACAAAAAGGGATCTGCATGTTGGAATTGGTGGGTGAAGTATAAAGAACGCTACGGGTTGTCTTTGCGAACACCGGAAAATCTTTCAGCAGGTAGAGCGATTTGTTCAAACCCGGTTATTTTAGaagatttttatgaaaaattagaaaaacagTTAAATGAACATGACATTCCACCCGAAAGAATATGGAACTGCGATGAAACTGGTCTGATGTTTGTCAACAAACCCAACAAAATTGTGACAAGCattggaaaaaaatatgtttacaacAGAACATACGCAGAAAAGGGTACGACAACCACATTATTGGCGTGCATAGATGCGACAGGATGTTACATCCCCCCATTTATTATATTCAAAGGTGTAAGAATCATACCACAACTGACAAAAGTTTTTATGCCAAACACCCAAGTACGATTTTCTCGAAAGGGATGGATCACGGGTGAACTATTCCTAGATTGGTTAAAATTCTTTGTTCGATGTATCCCTCCAGCATAG
- Protein Sequence
- MDDPNKKNRKYSETDLKTAVENVLSSTMTVYRASKEFKIPWSTLKENVTKYKTLREGNQDAQIVMSKIGRPFALPVEIEQKLLAYIIEMQERGFGLTVTKIKQIALSLAKAANICCTFNDKKGSACWNWWVKYKERYGLSLRTPENLSAGRAICSNPVILEDFYEKLEKQLNEHDIPPERIWNCDETGLMFVNKPNKIVTSIGKKYVYNRTYAEKGTTTTLLACIDATGCYIPPFIIFKGVRIIPQLTKVFMPNTQVRFSRKGWITGELFLDWLKFFVRCIPPA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00172813;
- 90% Identity
- iTF_00172813;
- 80% Identity
- iTF_00172813;